Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00226 ATGTCAGGAGAGGAAACCAAGGGCCGGCTTTCTGGTGGTAGTAGTGGCCGGAAGGCTTATTTACGGTCTGCTTCTTGGACTGCTAGATCGCCTTCAAAGCCTGATCCGATCCCTAATCCTACTTCTCGGCGGTCGAATAGTAAAGCAAGGTCTGCCTTGCCGCCACTTCAGCCTCTTTCGATCACTCGCCAGAATTTCAAGGAGTGGCCCAAGGCAAGCTCAGACGATCTTGGCATATGGCCACAACCTCAAACTCCTAGAGGATTTGCCAAACCTAGTTCAAATTCTGAAAAACAACCAGAGAAAGAGTTTCAGTTTAAGAAGGATAAGCTTGCGTTTTTCGACAAGGAGTGTTCAAGAATTCTGGAACATATATACTTAGGAAGCGATGCTGTTGCAAAGAATCGTGATGTTTTGAAACAGAACAAGATTACTCACGTGTTGAATTGTGTTGGATTTGTCTGTCTCGAGTATTTCAAAAGTGATTTTGTCTACAAGACTCTTTGGCTGCAAGATAGCCCCTCGGAGGACATTATCAGCATTCTTTACGATGTGTTTGATTACTTTGAAGATGTTAGAGAGCAAAATGGGCGGGTTTTTGTGCACTGTTGCCAGGGAGTTTCTAGATCGACATCACTTGTTATTGCCTATCTTATGTGGAGGGAGGGACAAAGCTTTGAAGATGCTTTTCAATACGTCAAGGCAGCTCGAGGGGTGACAAATCCGAACATGGGATTTGCTTGTCAACTAGTTCAGTGCCAAAAACGGGTTCATGCTGTGCCTGCAAGTCCGAATTCAATTTTGAGGATTTATCGGATGGCTCCGCATTCTCCATATGATCCGTTGCATTTGGTGCCCAAAATGTTAAGCCATCCGGGAGTGGAAGGACTTGATTCTCGCGGGGCGTTTGTTGTGCATATTCCTTCGATTATCTATGTTTGGGAGGGGAAGAAATGCAGTTTGGAAATGGTAAATATGGCTATGAAGGCAGCCTCTCAGGTCATTCGATATGAGAAGGCGAATGGTCCGATTCTGAGAATCAAAGAAGGCGAAGAGCCTTTTGGATTTTGGGATGCTCTTGCAAGTGGGCAGATTTTGGAAGATGGTTTTGACAGAGGGAAGGAAACGAAAGAAGAAATTTCTACAATTGTAGAAAAGAAAGTTGATGATTATGATTTAGATTTTGAAATATTTCATAAAGCACTTTCTGGGGGTGTTGTTCCTCCTTTTACCGTGTCGAATTCTGGATCGGAAAATTGTCTTCCTGCAAGAGAAAATGGGTGGGACAGGGTAAGAAGAAAGCTTGCTAATGGGATTATGAAAGAATTTTTCGAATCCTCCACGTTGAGCTGCGATCCTACGTCAGCTGGTGTTGAATCGAATATGACAGACAGTCTCGAAGAAACGGAGAGGGATGATTCTCCGATCGATCTTTCATCGCCGCCTTTCTCACCCACAACGTATTTATGTGGTTCACCAGATTCCTTCGCACGTTTCCTGAATAGCAGCCCAGATCGAATAAGTGATACTTTCGAAGAAGTAGAGCAGTCTCTTCATGATAATACAAATCCTCCTGGCTCACCAGATTCGTTTTATTGTTCTTCGGGTAGTAGTCCGAAACTCGATTCAAAATCCCCCACTCTTTCGCCTTCAAACTCTGATTACGCCAGTTCTTTTACCTTTTCTCCCACGTCATCTAACTGGTCTGACTTGTCATACCTTTCTTCTCAGCAACTTACGCCTTCCGGTTTCGACATAATGGACTATATTTTCTGCAAGAATTCTTTATTATCAGATAGTTCGTGTGAAGAAACCTCTCCTTTCCCAGCGGAGTCATTTCTTACCAATCATAATCCGAAAGTGGAAGATGCTTATTTCCCATCTGGGCCTCAACCTTTACCATCGATCTCAGAACGAAGAGGGAGCAATCCCCCTCCTCGTATGTTACAACCCGCCATTGAAGAACCACAGAAGATTTGGAGGAATAACATTAAACGATCTGTGTCTTTCTCTTTGCCTGACTTGCACAATGATATAATGGAAGTCGATGATTACAGTAAAGGGCCTTTGCTTGAACTTGAACAGAGAACGGAAATGAAAAGGGATGGGCCAAAATACGATACTCATCGAGCAATATGA 2139 43.62 MSGEETKGRLSGGSSGRKAYLRSASWTARSPSKPDPIPNPTSRRSNSKARSALPPLQPLSITRQNFKEWPKASSDDLGIWPQPQTPRGFAKPSSNSEKQPEKEFQFKKDKLAFFDKECSRILEHIYLGSDAVAKNRDVLKQNKITHVLNCVGFVCLEYFKSDFVYKTLWLQDSPSEDIISILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLVQCQKRVHAVPASPNSILRIYRMAPHSPYDPLHLVPKMLSHPGVEGLDSRGAFVVHIPSIIYVWEGKKCSLEMVNMAMKAASQVIRYEKANGPILRIKEGEEPFGFWDALASGQILEDGFDRGKETKEEISTIVEKKVDDYDLDFEIFHKALSGGVVPPFTVSNSGSENCLPARENGWDRVRRKLANGIMKEFFESSTLSCDPTSAGVESNMTDSLEETERDDSPIDLSSPPFSPTTYLCGSPDSFARFLNSSPDRISDTFEEVEQSLHDNTNPPGSPDSFYCSSGSSPKLDSKSPTLSPSNSDYASSFTFSPTSSNWSDLSYLSSQQLTPSGFDIMDYIFCKNSLLSDSSCEETSPFPAESFLTNHNPKVEDAYFPSGPQPLPSISERRGSNPPPRMLQPAIEEPQKIWRNNIKRSVSFSLPDLHNDIMEVDDYSKGPLLELEQRTEMKRDGPKYDTHRAI 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2228148 2230286 - Bma013210.1 Bma15g00226 96348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00226 712 MobiDBLite consensus disorder prediction 512 556 - -
Bma15g00226 712 ProSiteProfiles Dual specificity protein phosphatase domain profile. 117 259 IPR020422 GO:0006470|GO:0008138
Bma15g00226 712 SUPERFAMILY Actin depolymerizing proteins 263 370 - -
Bma15g00226 712 Pfam Dual specificity phosphatase, catalytic domain 125 255 IPR000340 GO:0008138|GO:0016311
Bma15g00226 712 PANTHER MKPA PROTEIN 1 611 - -
Bma15g00226 712 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 112 258 IPR029021 -
Bma15g00226 712 MobiDBLite consensus disorder prediction 1 101 - -
Bma15g00226 712 SMART dsp_5 117 256 IPR020422 GO:0006470|GO:0008138
Bma15g00226 712 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 176 237 IPR000387 GO:0016311|GO:0016791
Bma15g00226 712 ProSitePatterns Tyrosine specific protein phosphatases active site. 201 211 IPR016130 GO:0016311|GO:0016791
Bma15g00226 712 MobiDBLite consensus disorder prediction 449 483 - -
Bma15g00226 712 MobiDBLite consensus disorder prediction 39 68 - -
Bma15g00226 712 MobiDBLite consensus disorder prediction 517 556 - -
Bma15g00226 712 MobiDBLite consensus disorder prediction 449 463 - -
Bma15g00226 712 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 611 - -
Bma15g00226 712 Gene3D Severin 283 365 IPR029006 -
Bma15g00226 712 Gene3D Protein tyrosine phosphatase superfamily 90 259 IPR029021 -
Bma15g00226 712 MobiDBLite consensus disorder prediction 18 32 - -
Bma15g00226 712 CDD DSP 118 252 - -
Bma15g00226 712 SMART VILL_6 269 363 IPR007122 GO:0051015
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00226 - - - zju:107428496 858.211
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00226 Bma-Chr15:2228148 Bma03g00116 Bma-Chr3:909104 1.40E-170 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00226 Bma_Chr15 FPKM 1.362348 1.229873 0.304908 0.107466 0.091842 0.156662 0.018143 0.237837 0.152416 0.209858