Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00232 ATGGCGCTCGCGTTTGATGAATTTGGTAGGCCTTTCATTATAATCAAGGAGCAAGAGCAGAAGACGCGATTGAGAGGTCTCGATGCTCAGAAGGCCAACATTTCCGCTGCGAAAGCGGTTGCTCGCATCCTCAGGACTTCGCTCGGCCCTAAAGGCATGGACAAGATGCTGCAGAGCCCCGATGGCGACGTTACTATCACTAATGACGGAGCAACAATTTTGGAACAAATGGATGTTGACAATCAAATTGCAAAGCTAATGGTTGAGCTATCACGCAGTCAAGATTATGAAATAGGTGATGGGACAACAGGTGTTGTTGTAATGGCTGGCGCATTATTAGAACAGGCTGAACATCTGTTAGAACGGGGCATCCATCCCATTAGAGTTGCAGAGGGCTATGAACTGGCCTCTAAGATTGCCGTTGAGCATCTGGAACACATATCTCAGAAATTTGATTTTGGGCCAACTAATATTGAATCACTTGTTCAAACTTGCATGACAACTTTATCTTCTAAGATTGTAAACCGATGCAAGCGTGATTTGGCTGAGATTTCAGTTAAAGCTGTTCTTGCTGTTGCTGATCTAGAGAGAAAGGATGTTAATTTAGATTTGATAAAAGTAGAGGGAAAAGTTGGGGGAAAATTGGAAGATACCGAGCTTGTCTATGGTATTATTGTCGACAAGGATATGAGTCATCCTCAGATGCCAAAGAAAATTGAAGATGCAAAAATTGCTATCTTGACTTGCCCCTTTGAGCCTCCGAAGCCAAAGACAAAACATAAGGTTGATATTGACACAGTGGAGAAATTCCAGACCTTGCGCCAACAAGAGCAGAAGTATTTCGATGATATGGTTCAGAAATGCAAGGATGTTGGTGCTACTTTGGTAATCTGTCAGTGGGGTTTTGATGATGAGGCAAATCATCTGTTGGTGCACCGAAACTTGCCTGCTGTGAGATGGGTTGGTGGTGTAGAGTTGGAGCTGATAGCTATAGCAACAGGTGGAAGAATTGTCCCCAGGTTCCAGGAATTGACTCCAGAAAAGCTGGGAAAGGCTGGTTTGGTTCGAGAAAAAGCATTTGGTACTACAAAAGATCGAATGTATGCTATCAGAGCCTTTGAGAATAATAGCTGCTGCGGAATTGATTGCAATGATGTCGGGACGAATGACATGCGGGAACAGAATGTGTTTGAGACACTGATTGGTAAGCAGCAACAGATTTTACTGGCAACTCAGGTCGTAAAGATGATTTTGAAAATTGACGATGTCATTTCTTCATCTGAGTATTGA 1290 43.18 MALAFDEFGRPFIIIKEQEQKTRLRGLDAQKANISAAKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAEHLLERGIHPIRVAEGYELASKIAVEHLEHISQKFDFGPTNIESLVQTCMTTLSSKIVNRCKRDLAEISVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKKIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLVHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKAFGTTKDRMYAIRAFENNSCCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISSSEY 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2331081 2334217 + Bma013218.1 Bma15g00232 96354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00232 429 PANTHER CHAPERONIN 375 426 IPR017998 GO:0140662
Bma15g00232 429 PANTHER CHAPERONIN 5 375 IPR017998 GO:0140662
Bma15g00232 429 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT EPSILON 375 426 - -
Bma15g00232 429 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT EPSILON 5 375 - -
Bma15g00232 429 Gene3D - 374 424 IPR027413 -
Bma15g00232 429 ProSitePatterns Chaperonins TCP-1 signature 2. 66 82 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bma15g00232 429 SUPERFAMILY GroEL equatorial domain-like 21 426 IPR027413 -
Bma15g00232 429 Gene3D - 14 219 IPR027413 -
Bma15g00232 429 PRINTS Tailless complex polypeptide 1 (chaperone) signature 64 82 IPR017998 GO:0140662
Bma15g00232 429 PRINTS Tailless complex polypeptide 1 (chaperone) signature 94 113 IPR017998 GO:0140662
Bma15g00232 429 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 58 IPR017998 GO:0140662
Bma15g00232 429 SUPERFAMILY GroEL apical domain-like 217 379 IPR027409 -
Bma15g00232 429 SUPERFAMILY GroEL-intermediate domain like 157 223 IPR027410 -
Bma15g00232 429 ProSitePatterns Chaperonins TCP-1 signature 3. 94 102 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bma15g00232 429 Pfam TCP-1/cpn60 chaperonin family 40 364 IPR002423 GO:0005524
Bma15g00232 429 Gene3D GroEL 223 370 IPR027409 -
Bma15g00232 429 ProSitePatterns Chaperonins TCP-1 signature 1. 45 57 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00232 K09497 CCT5; T-complex protein 1 subunit epsilon - tcc:18609635 698.353
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma14g01835 Bma15g00232 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00902 Bma-Chr3:8954377 Bma15g00232 Bma-Chr15:2331081 5.64E-45 dispersed
Bma15g00232 Bma-Chr15:2331081 Bma07g01345 Bma-Chr7:48997074 9.21E-49 dispersed
Bma14g01835 Bma-Chr14:39265101 Bma15g00232 Bma-Chr15:2331081 9.78E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g592 . . . . . Bpe10g00853 Bma14g01835 Bma15g00232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00834 Blo11g01032 Bda07g01650 . . . . . . . . . Cma05g00055 . Car05g00043 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004994 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 0 1 1 1 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00232 Bma_Chr15 FPKM 5.892243 6.490716 1.025903 0.994675 6.399401 5.904994 7.449299 4.155606 4.038041 3.916926