Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00238 ATGAAGTTACATGGAGAAATGTGCCAGGCGCTTTCTGCAATATATGGCAAAGTGATGTCAATTTTTCCTTCCTTGGAAGCAGCACGGCCAAGAAGCAAATCTGGGATTCATGCATTATGTTCCTTGCATGTAGCCTTAGAAAAGACAAAAAATATTCTTCAACACTGCTCGGAGTCCAGTAAACTTTACTTGGCCATAACTGGGGATTCCGTACTCTCAAAATTTGATAAGGCAAGATGCGCCCTTGAAGATAGTCTGAGATGCGTTGAAGATATTGTGCCACAATCAATTGGCTATCTGATTCAAGGGATAGTCAGTGAACTTGAGGGCACTGTGTTTTCTCTTGATCCTTTTGAGAAACAAATTGGTAATGATATTATCCCTCTTCTCCAGCAGGGGAGGAAATTCAGTAATTCCAAAAACAATAATGAGCTAGAGTTATTTCACCAAGCTGCCATTAAACTTGGAATAACCTCCTCTAGAGCAGCCCTTGCAGAGAGAAGAGCTCTTAAGAAACTTCTAGATAGGGCTCACGCTGAAGAAGATAAGCGGAAGGAATCTATCGTGGCTTATCTTTTACATCTCATGAGGAAATACTCCAAATCTTTTAGATGTGAATTGTCAGATGACAATGATTCCCAGGGCTCTGCACCTTGTTCTCCCACTGTTCAGGGTTCGCTTGATGACATTGATTCTGGACGGGATGGAAATAGAAATTACTTCGAAAGGGAAAGCTGTGGAATTGTGGGGGAGGCTGACAGAAATGAGGCAGATAATATGTCCGTGCAGGAGGAAACTTCTGAACCTAACGTGTTTGGTAGCTATGGGAATTTGTTGGTAGCCTTGAGTGGAGGAGATTGGATGAAAAAGTGTAAGGCAGTGGAGCAGATAAGGATCTTGCTGAAGGATGATGTAGATGCTAGGGACTTTATGGGAGCTAGTGGCTTTGTGGAGGCACTTCTGGAATTTCTAAACTTAGCTTTGCATGAAAGGAATCTAAGCGCTCAGGAAAGTGGATCGATGGCTCTCTTCAACCTTGCCGTGAACAATAATAGAAACAAAGAGATGATGTTAGAGGCGGGAGTAATTATGTTGTTGGAGAAAATGATACTGAACTCAAACTCACATGGATATGCAGCAGCCCTTTATCTAAATCTCTCCTGTCTTGAAGATGCAAAGTTTATCATTGGCTCAAGTAGAGCCGTCCCATTCATGACTCATCTACTCACAGGAACAGCTTCACCTCAATGGAAGTTCGATGCATTACATTCGCTTTACAATCTCTCCACATTGCCGTCCAATATTCCATACCTTCTCTCTGCCGGCATTGTGAGTAGCCTTCAAGTCCTTTTGGCAGGTTCTGATGACCACATTTGGAACGAAAGATCTATTTTGGAGTTTGTTCGGGATGGTGATAGAAGTGTAGCAGAATTGATGGACATAGGAAAGCAACTTTTAGGAAGGAGGCAGGTTCTTTCAGCTGTTCCACGCCTTATGGACACTGTGCAGGTAGAAGGAACCTTTCCTGATGGAACTAAGTTAGTCACCATTCATGATCCAATTGCTAGCGAAAATGGGAATCTGGAGCTAGCTTTACATGGATCTTTTCTTCCAATTCCTTTACTAGAGGCATTTCCTGGCATCGAAAGCACTACATTTCCTGGTGAAATTGTCTTTGGAGGTGGAAGTATTACCATTAATCCCGGAAGGAAAGCTGTAATCCTCAAAGTTGTCAATAATGGAGACCGGCCCATTCAGGTTGGCAGCCATTATCATTTTATTGAGGTTAACCCTTTCTTGGTTTTTGATCGGTGGAAATCACATGGCTTGCGCTTGAACATACCGGCTGGGACTGCCACACGTTTTGAGCCAATTTTAGTTTTTGTCCAGCCTGGGGAAGCTAAAAGTGTAGTCCTCATCTCTATCAGTGGTAACAAAGTTATCAGAGGGGGAAATAGCTTTGCTGGTGGTCCAGTTGATGGCACTAAATTTGAAGCATTCATGTCAGCTGTAAGCATGAAAAAGATTGGAACTATTGAAGAAAAAAATGCCAGAGAAGGTGTTACCGGCGAAGATCCTGATTTCACCAGTGTAATGTCACGTGAGGCATATGCAAATATGTATGGTCCTACTGTTGGTGACAAAATTCGACTAGGTGATACGGACTTATATGCTGAAATTGAACACGACTTTGCTATATATGGTGATGAATGTGTATTTGGAGGTGGAAAGGTTATACGAGAGGGAATGGGTCAGTCATGTGGACATCTACCGGCTGACTCTCTGGATACTGTAATAACAAATGCTGTGATCATTGATTATAGTGGAATAATTAAGGCAGATATTGGTATCAAAGATGGTATTATAGTTTCCCTGGGAAAATCTGGCAATCCAGATGTCATGCAAGGTGTTCATAGTAAAATGATCATTGGGGCTAACACTGAGGTTATTGCTGGAGAAGGATTAATCATTACAGCAGGAGCTATAGATTGTCATGTGCACTTTATATGTCCTCAGCTTGCATATGAGGCAATCACCAGTGGCATTACTACTTTGGTGGGAGGTGGAACTGGGCCAGCTAGTGGAACTCGCGCGACTACTTGCACACCATCCATATTACAGATGATGTTAATGCTCCAATCAACAGATGATATGCCTTTAAATTTTGGTTTTACAGGCAAAGGAAATAGTTCTCATCCTGATGAGCTACATGAAATAATAAAGGCGGGAGCAATGGGCTTGAAATTGCACGAGGATTGGGGAAGTACTCCAGCTGCAATAGACAATTGTTTATCTGTTAATATACATACTGACACCTTAAATGAATCTGGCTTTGTGGAACATACAATTGCAGCATTTAAAGGAAGAACAATACACACATACCACAGTGAAGGTGCTGGAGGTGGTCATGCCCCAGATATCATTTGCGTTTGTGGTGTGAAAAATGTTCTGCCGTCTTCGACAAATCCCACACGGCCCTTCACATCCAATACTATTGATGAGCATCTTGACATGCTGATGGTTTGTCATCACCTTGATAAGGATATACCAGAAGATGTTGCCTTCGCTGAATCAAGGATACGAGAGGATACAATTGCTGCAGAAGACATTTTGCATGACATGGGAGCAATTAGTATTATTTCTTCTGATTCACAGGCAATGGGTCGCATAGGAGAGGTTATAAGCAGAACTTGGCAAACTGCACACAAGATGAAAATACAAAGAGGACCTCTTGGTTCCGATGGGCCAAACAGTGACAACCTTAGGATCAAACGCTATATTTCCAAATACACAATAAATCCAGCAATAGTAAATGGCTGCTCTGAGTATATCGGATCAGTAGAGGATGTTTTCTTTTACTTTAATTATGAATTAGTACTCATGAGACCAATGTTTGGAGCCTTTGGCAAAGCAGGAAGCGCTCATTCCATTGCATTTGCGGCTCTAGAGAAAGGGGTTAAATCCTCGTATGGGCTCAGCAAGAGAGTTGAAGCAGTGAGCAATGTTAGGAAACTCACTAAACTTGACATGAAATTTAATGACGCACTTCCACACATCACCGTTGATCCAGAGACCTACACAGTCACAGCAGACGGAGAGATCATCACCTGTGCTGCCGCAGCCACAGTTCCCCTTTCTAGAAATTACTTCCTATTTTAA 3660 42.27 MKLHGEMCQALSAIYGKVMSIFPSLEAARPRSKSGIHALCSLHVALEKTKNILQHCSESSKLYLAITGDSVLSKFDKARCALEDSLRCVEDIVPQSIGYLIQGIVSELEGTVFSLDPFEKQIGNDIIPLLQQGRKFSNSKNNNELELFHQAAIKLGITSSRAALAERRALKKLLDRAHAEEDKRKESIVAYLLHLMRKYSKSFRCELSDDNDSQGSAPCSPTVQGSLDDIDSGRDGNRNYFERESCGIVGEADRNEADNMSVQEETSEPNVFGSYGNLLVALSGGDWMKKCKAVEQIRILLKDDVDARDFMGASGFVEALLEFLNLALHERNLSAQESGSMALFNLAVNNNRNKEMMLEAGVIMLLEKMILNSNSHGYAAALYLNLSCLEDAKFIIGSSRAVPFMTHLLTGTASPQWKFDALHSLYNLSTLPSNIPYLLSAGIVSSLQVLLAGSDDHIWNERSILEFVRDGDRSVAELMDIGKQLLGRRQVLSAVPRLMDTVQVEGTFPDGTKLVTIHDPIASENGNLELALHGSFLPIPLLEAFPGIESTTFPGEIVFGGGSITINPGRKAVILKVVNNGDRPIQVGSHYHFIEVNPFLVFDRWKSHGLRLNIPAGTATRFEPILVFVQPGEAKSVVLISISGNKVIRGGNSFAGGPVDGTKFEAFMSAVSMKKIGTIEEKNAREGVTGEDPDFTSVMSREAYANMYGPTVGDKIRLGDTDLYAEIEHDFAIYGDECVFGGGKVIREGMGQSCGHLPADSLDTVITNAVIIDYSGIIKADIGIKDGIIVSLGKSGNPDVMQGVHSKMIIGANTEVIAGEGLIITAGAIDCHVHFICPQLAYEAITSGITTLVGGGTGPASGTRATTCTPSILQMMLMLQSTDDMPLNFGFTGKGNSSHPDELHEIIKAGAMGLKLHEDWGSTPAAIDNCLSVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIICVCGVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDKDIPEDVAFAESRIREDTIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKIQRGPLGSDGPNSDNLRIKRYISKYTINPAIVNGCSEYIGSVEDVFFYFNYELVLMRPMFGAFGKAGSAHSIAFAALEKGVKSSYGLSKRVEAVSNVRKLTKLDMKFNDALPHITVDPETYTVTADGEIITCAAAATVPLSRNYFLF 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2376515 2390973 + Bma013224.1 Bma15g00238 96360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00238 1219 Pfam Urease beta subunit 554 655 IPR002019 GO:0035550|GO:0043419
Bma15g00238 1219 Pfam Amidohydrolase family 823 1115 IPR006680 GO:0016787
Bma15g00238 1219 SUPERFAMILY Urease, gamma-subunit 463 525 IPR036463 GO:0016151|GO:0043419
Bma15g00238 1219 Pfam Urease alpha-subunit, N-terminal domain 699 817 IPR011612 -
Bma15g00238 1219 TIGRFAM urease_alph: urease, alpha subunit 699 1116 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 Pfam Urease subunit beta-alpha linker domain 659 692 IPR040881 -
Bma15g00238 1219 ProSitePatterns Urease nickel ligands signature. 825 838 IPR029754 GO:0016151
Bma15g00238 1219 CDD Urease_alpha 699 1218 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 SUPERFAMILY Urease, beta-subunit 553 688 IPR036461 -
Bma15g00238 1219 Gene3D - 273 461 IPR011989 -
Bma15g00238 1219 Gene3D Urease, beta subunit 570 696 IPR036461 -
Bma15g00238 1219 PANTHER UREASE 463 1115 - -
Bma15g00238 1219 PANTHER UREASE 1124 1219 - -
Bma15g00238 1219 Gene3D - 462 545 IPR036463 GO:0016151|GO:0043419
Bma15g00238 1219 Hamap Urease subunit alpha [ureC]. 697 1219 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 SUPERFAMILY ARM repeat 281 457 IPR016024 -
Bma15g00238 1219 Gene3D - 1121 1217 - -
Bma15g00238 1219 ProSiteProfiles Urease domain profile. 827 1219 IPR017951 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 PRINTS Urea amidohydrolase (urease) protein signature 1024 1040 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 PRINTS Urea amidohydrolase (urease) protein signature 1091 1106 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 PRINTS Urea amidohydrolase (urease) protein signature 985 1002 IPR005848 GO:0006807|GO:0009039|GO:0016151
Bma15g00238 1219 ProSitePatterns Urease active site. 1007 1023 IPR017950 GO:0009039
Bma15g00238 1219 TIGRFAM urease_beta: urease, beta subunit 553 660 IPR002019 GO:0035550|GO:0043419
Bma15g00238 1219 CDD Urease_gamma 464 521 IPR002026 GO:0016151|GO:0043419
Bma15g00238 1219 Gene3D - 827 1105 - -
Bma15g00238 1219 SUPERFAMILY Metallo-dependent hydrolases 828 1219 IPR032466 -
Bma15g00238 1219 CDD Urease_beta 554 659 IPR002019 GO:0035550|GO:0043419
Bma15g00238 1219 Pfam Urease, gamma subunit 463 521 IPR002026 GO:0016151|GO:0043419
Bma15g00238 1219 Gene3D Urease, subunit C, domain 1 697 826 IPR011059 GO:0016810
Bma15g00238 1219 SUPERFAMILY Composite domain of metallo-dependent hydrolases 699 874 IPR011059 GO:0016810
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00238 K01427 URE; urease [EC:3.5.1.5] - qsu:112022271 1220.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00018 Bma15g00238 CCT
Bma06g00574 Bma15g00238 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00238 Bma-Chr15:2376515 Bma02g00011 Bma-Chr2:233948 2.24E-14 dispersed
Bma01g00018 Bma-Chr1:310878 Bma15g00238 Bma-Chr15:2376515 1.28E-78 wgd
Bma15g00238 Bma-Chr15:2376515 Bma06g00574 Bma-Chr6:30839405 4.10E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1184 Blo01g00365 Blo16g01194 . . . Bpe10g00785 . Bma15g00238 Cmo04g01920 Cmo18g00698 . Cma18g00710 . Car18g00655 Sed06g1738 Cpe09g00579 Cpe01g01608 Bhi07g01900 Tan04g0075 Cmetu10g0234 Lac13g0067 Hepe10g0096 . . . . . . . . . Cone13ag1136 Cone19ag1117 Cone8ag0740 . Lsi04g00666 . . Cme10g00643 Blo06g00829 . . . . . Bma01g00018 Bma06g00574 . . . Cma04g01823 . Car04g01836 . . . . . . . . . . Cla11g01354 Cam11g1412 Cec11g1438 Cco11g1436 Clacu11g1569 Cmu11g1389 Cre11g1810 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00238 Bma_Chr15 FPKM 1.316952 1.280798 0.301231 0.089232 0.0 0.188789 0.051671 0.21941 0.113271 0.237623