Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00243 ATGATGTTGCATGCTCAGAATCTCCTGCAGGGAACTCGAATTTCACTTGTTCATTATGTAAATTGGGTGTCCTTTCGAAGTTTCTCTCTCGCATTTTCTCCGGCAAGTTTTTCTTCCCCTCCGACGTGTAAAGATGGAGTTTTTGAGCAAGCACTACAATCTGAAATCGTAGAAGGATTGTCGGACCTTGACATTATTGCTGCTAAAGCTTGCAAAGGAAGCGATGAAGACGAAGTCCTTCGATCTCTATCAAACGAGGAAGCATGTAACTCCATTAATCTTTCAAATTACCTTGTCGAGAAACTGCTCCATCGATTTAAGGATGATTGGAAGTCTGCATTGGGTGTCTTCAAATGGGCAGAGCACCGCTCAGGCTTTATGCCATCCCCCGAAGCTTATGATCAAGTTGTGAATACACTAGGTAAAACAAAGCAAATGAAGAAGATGATGAACTTTCTAGAAGAGATGAATCAAATTCATCTTGTAACACCTAAAACCATAGCAATAGTTATGAGAAGATATGCAGGTGCAGGAGAATGGGAAAATGCTGTGAGGATATTCGATGACTTAGAAACTTATGGGTTGGAGAAGAACACTGAATCCATGAACTTGTTGCTTGATACCCTTTGCAAAGAGAAGAAGGTAGATCAAGCCCGTGAAGTATTTTTAAAGCTGAAAACTCACATTTCTCCCAATGCTTTCACGTTCAACATTTTCATCCATGGTTGGTGCAAGGCTAACCGTGTTGATGAGGCGTATTGGACAATGCAAGAGATGAAGGGATACGGCTATCGTCCTTGTGTCATTAGTTATTCCACCATTATTCTGTTCTATTGCCGCCAATTCAACTTCTCCAAAGTCTATGAGCTGCTTGATGAAATGGAAGCTAATAAATGTCCACCAAATATCATCTCCTACACAACTATTATGTGCTCGTTGGCAAAATCAAAGGAATTTGAAGAGGCTTTACAAATTTCAGAGAGAATGAAAGCAGTTGGATGTGAACCAGATACACTATTTTACAACTCATTGATCCATACACTTGGTCAAGCTGGTCAAATACGAAAGGCAACTCAAGTATTTGAATTGGAAATGCCAAGAAAGGGTGTTAAGCCAAATACATCAACTTACAACACTTTGATTGCTATATTCTGCCACAGCAATCAAGCACAAAAGGCCATGAATCTACTGAGGGAGATGGAGGATTTAAATCTCTGTAAGCCTGATTTGCAGACATTCTACCCATTACTCAAATCCTGCTTCAAAACGAAGAGGGTCAATGGTGATATGAGCAAGCTATTGGACTGTATGATCAATAAACATCATCTAAGCCTCGATATCTGTACGTATACCCTTTTAATTCATGGGTTGTGTAGAGCAGGTAAATGCGAGTGGGCTTACCATTTTTTTCAGGAGATGTGTAGGCAAGACATAAAGCCTAGGTACCTTACTTGCCGGTTGCTCTTGGATGAATTGAAGCAAAAGAATATGGACCTAGCTGCTGAGAGCCTTGAAGTTTTCATGAAGAGATTATAG 1536 40.3 MMLHAQNLLQGTRISLVHYVNWVSFRSFSLAFSPASFSSPPTCKDGVFEQALQSEIVEGLSDLDIIAAKACKGSDEDEVLRSLSNEEACNSINLSNYLVEKLLHRFKDDWKSALGVFKWAEHRSGFMPSPEAYDQVVNTLGKTKQMKKMMNFLEEMNQIHLVTPKTIAIVMRRYAGAGEWENAVRIFDDLETYGLEKNTESMNLLLDTLCKEKKVDQAREVFLKLKTHISPNAFTFNIFIHGWCKANRVDEAYWTMQEMKGYGYRPCVISYSTIILFYCRQFNFSKVYELLDEMEANKCPPNIISYTTIMCSLAKSKEFEEALQISERMKAVGCEPDTLFYNSLIHTLGQAGQIRKATQVFELEMPRKGVKPNTSTYNTLIAIFCHSNQAQKAMNLLREMEDLNLCKPDLQTFYPLLKSCFKTKRVNGDMSKLLDCMINKHHLSLDICTYTLLIHGLCRAGKCEWAYHFFQEMCRQDIKPRYLTCRLLLDELKQKNMDLAAESLEVFMKRL 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2443606 2445141 - Bma013229.1 Bma15g00243 96365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00243 511 Pfam PPR repeat 201 226 IPR002885 -
Bma15g00243 511 Pfam PPR repeat 229 260 IPR002885 -
Bma15g00243 511 Pfam PPR repeat 443 473 IPR002885 -
Bma15g00243 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Bma15g00243 511 SUPERFAMILY HCP-like 296 506 - -
Bma15g00243 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Bma15g00243 511 TIGRFAM PPR: pentatricopeptide repeat domain 304 338 IPR002885 -
Bma15g00243 511 TIGRFAM PPR: pentatricopeptide repeat domain 269 303 IPR002885 -
Bma15g00243 511 TIGRFAM PPR: pentatricopeptide repeat domain 448 480 IPR002885 -
Bma15g00243 511 TIGRFAM PPR: pentatricopeptide repeat domain 376 409 IPR002885 -
Bma15g00243 511 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Bma15g00243 511 TIGRFAM PPR: pentatricopeptide repeat domain 234 266 IPR002885 -
Bma15g00243 511 Pfam Pentatricopeptide repeat domain 290 350 IPR002885 -
Bma15g00243 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 372 IPR002885 -
Bma15g00243 511 Gene3D Tetratricopeptide repeat domain 365 510 IPR011990 GO:0005515
Bma15g00243 511 PANTHER OS02G0601600 PROTEIN 43 511 - -
Bma15g00243 511 Gene3D Tetratricopeptide repeat domain 296 364 IPR011990 GO:0005515
Bma15g00243 511 Gene3D Tetratricopeptide repeat domain 65 226 IPR011990 GO:0005515
Bma15g00243 511 Gene3D Tetratricopeptide repeat domain 227 295 IPR011990 GO:0005515
Bma15g00243 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Bma15g00243 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Bma15g00243 511 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 43 511 - -
Bma15g00243 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Bma15g00243 511 Pfam PPR repeat family 372 421 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00243 - - - qsu:111985482 664.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00261 Bma-Chr4:2179118 Bma15g00243 Bma-Chr15:2443606 1.59E-17 dispersed
Bma13g00775 Bma-Chr13:28069903 Bma15g00243 Bma-Chr15:2443606 8.51E-49 dispersed
Bma15g00153 Bma-Chr15:1620913 Bma15g00243 Bma-Chr15:2443606 2.81E-07 dispersed
Bma15g00243 Bma-Chr15:2443606 Bma14g01939 Bma-Chr14:41352230 2.38E-22 dispersed
Bma15g00243 Bma-Chr15:2443606 Bma01g01883 Bma-Chr1:69321843 1.06E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00243 Bma_Chr15 FPKM 58.78022 65.827805 45.062977 47.68388 70.053444 70.640221 74.695099 42.91909 41.533283 45.54285