Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00246 ATGGCATTGAATTTCTTTACCCGGCCACTCTTCTCGGGACGCATTCCCGATGAAAATTTGGTGTCATCTCTGTGGTATCCAGATTGGGAGGTCAGTGATCGCTACAATTATGTAAAGGATGTAGGCGATAGGGGCTGCTCTCACGATTCTGCATCCAAGGATATCCTTGATCTTTTGCCACCAGATCCATTTGGAATGGATGTAAGTACTACATTTACACCAATCACAGGTTGGATGGAGGATTTTGAAGTAGATTATTATGGATATGGAAGAGATGATGGTAATAAAGACGATGGAAACTCTCTATTATTTTCCGGGTTGAATTTCATTTGGAATAATACTTTGAGGTTTCAAGAATTATCTGAAAGTACAGGAGCTGTTCATAACTTTTGTGGCTACTTGAAAGAGAAAGAATTATATTATGCTTGCCACTCTGGGGATTCTGTATTACACCATTACGAGGAAGACGTCATGATGCTTGGTAATGAGAATCTTGGTTCTTCTCAGCCAAGAACTGAAGATATTCGAGAGAGAATCTACTCTGCTCCCCATGAAGCTTTAAATTACGCTCTTAGTTATCTTGGTGTCAGAGATCTTCTTGCCATTGATAATGTCTGCAGATCTTTACATTCAACTGTTCGAGGGGATCCTCTGTTGTGGAGGAATATCGTCATAGATCAACCATTGAATGAGAAGATTACTGATGACGTTCTTTTGAAATTAACTAATATGGCTCAAGGTAACCTGCAATGTCTGAGCCTGGTGGAATGCTCAAAAATTACTGATGATGGGTTGAGGCGTGTTCTAGAAAAGAATCGTAGGCTAACCAAGCTGAGTGTTCCTGGATGTACTAGACTAAGTGCTGAGGGCATTATAAGTTGTTTGAAGGAGTTGAAGTCAACAGGTACATCAACCCGTGAAGAAGGGGTGAAGCGTTTAAGAATTGGCGGGATCTACGGTGTGACACAAACGCACTTCGAAGAGATAACCTATTTGCTGGGCAATGATTTCCCGATCCATAAAAGTGAGCACAAGCCTCATTTCTACTACAGAGGAAATTTTTATCTATCTTGCGATGATGCTCGTTCTATTGATATCGAAACATGCCCGAGATGTCAGAACTTGAGGCTTGTTTATGATTGCCCTCTAAGTGATTGTGGGGGAAAAGACCATCCAACTCGAGTCTGCAGAGCATGCTCTCTGTGCATAGCCAGGTGTGTCGAATGCGGACGATGTATTAATGATGGTGAATATGAGGAAACCTTTTGCCTGGAATTGCTTTGCTCTGATTGTTTGAAGCAAATTATGGAATTTGAAGAGAATTATGGTGAGATTGTTGCCCCTTCCATACCTTGA 1356 41.37 MALNFFTRPLFSGRIPDENLVSSLWYPDWEVSDRYNYVKDVGDRGCSHDSASKDILDLLPPDPFGMDVSTTFTPITGWMEDFEVDYYGYGRDDGNKDDGNSLLFSGLNFIWNNTLRFQELSESTGAVHNFCGYLKEKELYYACHSGDSVLHHYEEDVMMLGNENLGSSQPRTEDIRERIYSAPHEALNYALSYLGVRDLLAIDNVCRSLHSTVRGDPLLWRNIVIDQPLNEKITDDVLLKLTNMAQGNLQCLSLVECSKITDDGLRRVLEKNRRLTKLSVPGCTRLSAEGIISCLKELKSTGTSTREEGVKRLRIGGIYGVTQTHFEEITYLLGNDFPIHKSEHKPHFYYRGNFYLSCDDARSIDIETCPRCQNLRLVYDCPLSDCGGKDHPTRVCRACSLCIARCVECGRCINDGEYEETFCLELLCSDCLKQIMEFEENYGEIVAPSIP 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2471069 2475145 - Bma013232.1 Bma15g00246 96368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00246 451 PANTHER F-BOX PROTEIN SKIP14 1 441 - -
Bma15g00246 451 Gene3D Ribonuclease Inhibitor 223 324 IPR032675 -
Bma15g00246 451 Pfam F-box-like 183 225 IPR001810 GO:0005515
Bma15g00246 451 Gene3D - 178 222 - -
Bma15g00246 451 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 1 441 - -
Bma15g00246 451 ProSiteProfiles F-box domain profile. 176 223 IPR001810 GO:0005515
Bma15g00246 451 SUPERFAMILY RNI-like 232 385 - -
Bma15g00246 451 SUPERFAMILY F-box domain 179 226 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00246 - - - jcu:105644753 539.265
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00025 Bma15g00246 CCT
Bma14g01878 Bma15g00246 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00025 Bma-Chr1:369691 Bma15g00246 Bma-Chr15:2471069 8.88E-164 transposed
Bma01g00480 Bma-Chr1:3941633 Bma15g00246 Bma-Chr15:2471069 1.16E-52 transposed
Bma14g01878 Bma-Chr14:40230481 Bma15g00246 Bma-Chr15:2471069 1.12E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1136 . . Bda01g02193 . Bpe13g00519 . Bma14g01878 Bma15g00246 . Cmo18g00710 . Cma18g00723 . Car18g00669 Sed06g1724 Cpe09g00566 Cpe01g01595 Bhi07g01864 Tan04g0101 Cmetu10g0075 . Hepe10g0079 . . . . . . . . . Cone13ag1120 Cone19ag1105 Cone8ag0721 . Lsi04g00650 . . Cme10g00629 Blo06g00819 . . . . . Bma01g00025 . . . . Cma04g01812 . Car04g01824 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006614 1 1 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 0 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00246 Bma_Chr15 FPKM 2.866298 4.490771 4.098709 5.030633 2.56257 1.345952 1.3846 7.111462 9.995365 9.354536