Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00248 ATGATTAAGAACATACTTGGAATGCTTCCTTGGAAGCCGTCAAAATCGTCGGAGAATACAGAATATGGCGATGGAAACAAGCTTTCTCAATTCGGAAACACAGTACCGAGTGGAAATTTAGCAGCTCCTTTGTATGAACCATTGCCGGCGTTCAAGGACGTCCCGAGGTCAGAGAAAAATAACTTGTTCATCAAGAAGCTTAACTTATGCTCTTTCGTGTTCAACTTTTCTGACCCGACAAAGAATCTAAAAGAAAAAGACATCAAGAGGCAGACTTTGCTCGAACTGGTCGATTATGTGATTTCCGCTAATGGGAAATTCGATGCAACGACGACGGAAGAAGTTGTAAGAATGGTGTCTGTGAATTTGTTCCGGTCAATATGTCCGCAGCCATGCGACAGGGAAGTCTTAGAATCCTTCGACATGGAAGAGGAAGAGCCATTGATGGATCCATCATGGCCTCACCTTCAAATCGCATACGAATTCCTCCTCAGATTCGTCGTATCTCCTGCAACAGACGCGGAGTTAGCCAAGAGATACATCGATCACTTCTTTGTTCTCAAGTTATTAGATCTCTTCGACTCTGAAGATCCGAGGGAGAGAGAATATTTGAAAACTATTCTGCATCGCATATACGGAAAATTCATGGTTCATCGTCCGTACATCAGAAGAGCAATCAACAACATCTTCTTCCGTTTCATCTTCGAAACGGAGAAGCATAACGGAGTTGCAGAGCTGTTAGAGGTTTTGGGAAGTGTCATAAATGGATTTGTTCTTCCGCTAAAAGAAGAACACGAGGTGTTTCTGGTTCGAGTTTTGATCCCTCTTCACAAACCCAAGTGCTTGTTTATGTATCATCAGCAGCTGTCTTACTGCATTTCGCAGTTTGTGGAGAAAGACCGTAAGCTGACCGAGACGGTGATCGGAGGTTTGCTCAAGTATTGGCCGATGACAAATAGCTCGAAGGAAGTCATGTTCTTGAGCGAGCTGGAGGAAATACTGGAAGCCACTCGGCCAGAAGAATTTCAAAGATTTATGGTTCCCCTTTTTCGCCAGATTTCGCGTTGCTTGAGCAGTTCCCACTTTCAGGTGTCGGAAAGGGCGTTGTTCTTGTGGAATAATGACAAGATAATGAAGTTAATCAGAGAAAACCGAAAGATCATACTGCCTATCGTCTTCCCAGCGCTGGAGAAACATGGGAGAAATCATTGGAATCAGGCAGTGCAGAGCTTGACTAACAATGTCCGTAAGATTTTCTCCGATGTCGATCCCGAGCTGTTTGAGCAATGCGTGAAAATGTTTAGCGAAGATGAAGAAAAAGCAGAGGAGATCAACAGAAGAAGTGAAACCACGAGAAAACCCATTGAGGCAAAAGCTCTAAGTAACGAAGCCGTTCTAGTTTCCGAGTAG 1410 43.9 MIKNILGMLPWKPSKSSENTEYGDGNKLSQFGNTVPSGNLAAPLYEPLPAFKDVPRSEKNNLFIKKLNLCSFVFNFSDPTKNLKEKDIKRQTLLELVDYVISANGKFDATTTEEVVRMVSVNLFRSICPQPCDREVLESFDMEEEEPLMDPSWPHLQIAYEFLLRFVVSPATDAELAKRYIDHFFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPYIRRAINNIFFRFIFETEKHNGVAELLEVLGSVINGFVLPLKEEHEVFLVRVLIPLHKPKCLFMYHQQLSYCISQFVEKDRKLTETVIGGLLKYWPMTNSSKEVMFLSELEEILEATRPEEFQRFMVPLFRQISRCLSSSHFQVSERALFLWNNDKIMKLIRENRKIILPIVFPALEKHGRNHWNQAVQSLTNNVRKIFSDVDPELFEQCVKMFSEDEEKAEEINRRSETTRKPIEAKALSNEAVLVSE 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2483549 2485020 + Bma013233.1 Bma15g00248 96370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00248 469 PIRSF PP2A_B56 10 467 IPR002554 GO:0000159|GO:0007165|GO:0019888
Bma15g00248 469 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 17 463 IPR002554 GO:0000159|GO:0007165|GO:0019888
Bma15g00248 469 SUPERFAMILY ARM repeat 60 440 IPR016024 -
Bma15g00248 469 Gene3D - 55 457 IPR011989 -
Bma15g00248 469 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 48 459 IPR002554 GO:0000159|GO:0007165|GO:0019888
Bma15g00248 469 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B' DELTA ISOFORM 17 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00248 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' - pop:7477049 696.427
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00582 Bma15g00248 CCT
Bma01g00027 Bma15g00248 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01357 Bma-Chr14:25221151 Bma15g00248 Bma-Chr15:2483549 0 dispersed
Bma15g00248 Bma-Chr15:2483549 Bma01g00027 Bma-Chr1:386212 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1133 Blo01g00375 Blo16g01186 Bda01g02195 . Bpe13g00517 . . Bma15g00248 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag1103 Cone8ag0719 . . . . . Blo06g00818 . . . . . Bma01g00027 Bma06g00582 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000671 5 4 6 5 5 2 4 2 2 2 2 2 3 2 2 4 2 8 3 2 2 4 2 2 2 2 2 9 5 3 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00248 Bma_Chr15 FPKM 19.303747 20.627672 15.448294 14.364202 6.557637 7.844408 6.131325 19.482145 18.814077 16.556524