Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00254 ATGAGAACCAGGAGAGGCCTCTCTTATCCCAGGGTAGCAACCCTACCCTTGAAGAGAACTAGCGACGACGCCGGAGGATTCTCGTTTTGCTGCCGGAAAAGGAATAAATTCTCCTCCCACGCTTATACTTTCTTTGACTCCTTGCCGGACGACCTTGTCATCTCGATACTCTGCAAACTCTCCTCCTCTGCGGCCTGCCCTTCCGATTTTGTCAACGTTTTTATGACATGCAAAAGGCTGAAGGGTTTAGCTCTTCATCCGCTGGTTTTGTCTAAAGCTTCAGAAAAGACGTTTGCCCTTCAGGCAAAAAACTGGTCGGAATCGGCTCACACTTTCCTTAAACGGTGCTGCGACGCCGGGAACGTTGAGGCCTGTTATACTCTAGGCATGATTCGGTTTTACTGTTTGCAAAACCGAGGAAGCGGAGCTTCTCTAATGGCGAAAGCTGCGATTTGCTCGCATGCTGTTGCGTTATACTCGCTCGCCGTTGTCCAGTTCAACGGCAGCGGTGGTTCGAAAAACGACAAGGATCTCAGGGCTGGCGTTGCGCTTTGTGCGCGTGCCGCCTTCCTTGGTCACATCGATGCGCTCAGGGAGCTGGGCCACTGCCTGCAAGACGGCTACGGAGTTCGTCAAAACATTACCGAGGGGCGGCGGTTCCTCGTACAAGCAAACGCCCGTGAGCTCGCCGCGGTGCTTTCCTCAGTGGCCGATGCCGGTGACTCCTTCCCTTCTAACCATCGTCCCGTCGCCGGGTCCGGCTTCACGCTGCTGAGCGATTTTGGCTGCAACGTCCCAGCGCCGGAGACTCATCCGGCCAATCGCTTCATGGTGGAGTGGTTTTCAGCGGCGCGCTGGAATTCCCCGGACTGTGGGCTGAAGTTATGTTCGCACGAGGGGTGTGGAAGACCAGAGACGAGAAGAAACGAGTTTCGCCGCTGTTCCGTCTGCGGCGTCGTAAACTACTGCTCACGGGCTTGCCAGGCGCTTGATTGGAAGCTCCGCCACAAGATGGAATGCATACCCGAGGTCCGATTAGTGGAGGAAGACGGCGACGTCGCTGAGCGTGACGGCGTAGATGGCGGAGCCGACGACATTAACGTGCAAAGTTAA 1113 55.62 MRTRRGLSYPRVATLPLKRTSDDAGGFSFCCRKRNKFSSHAYTFFDSLPDDLVISILCKLSSSAACPSDFVNVFMTCKRLKGLALHPLVLSKASEKTFALQAKNWSESAHTFLKRCCDAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAICSHAVALYSLAVVQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSVADAGDSFPSNHRPVAGSGFTLLSDFGCNVPAPETHPANRFMVEWFSAARWNSPDCGLKLCSHEGCGRPETRRNEFRRCSVCGVVNYCSRACQALDWKLRHKMECIPEVRLVEEDGDVAERDGVDGGADDINVQS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2527075 2528412 - Bma013239.1 Bma15g00254 96376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00254 370 SUPERFAMILY HCP-like 100 225 - -
Bma15g00254 370 SUPERFAMILY HIT/MYND zinc finger-like 294 342 - -
Bma15g00254 370 Gene3D Tetratricopeptide repeat domain 88 239 IPR011990 GO:0005515
Bma15g00254 370 Pfam MYND finger 301 340 IPR002893 -
Bma15g00254 370 SUPERFAMILY F-box domain 41 99 IPR036047 GO:0005515
Bma15g00254 370 Gene3D - 295 344 - -
Bma15g00254 370 PANTHER MYND DOMAIN-CONTAINING 1 360 IPR044508 -
Bma15g00254 370 PANTHER OSJNBA0044M19.1 PROTEIN 1 360 - -
Bma15g00254 370 ProSiteProfiles Zinc finger MYND-type profile. 298 340 IPR002893 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00254 - - - zju:107433978 535.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01254 Bma-Chr3:20996903 Bma15g00254 Bma-Chr15:2527075 2.38E-71 dispersed
Bma15g00254 Bma-Chr15:2527075 Bma06g00257 Bma-Chr6:3551607 4.22E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1251 . . . . . Bpe10g00767 . Bma15g00254 . Cmo18g00682 . Cma18g00695 . Car18g00645 . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00813 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01338 Cam11g1396 Cec11g1418 Cco11g1415 . . Cre11g1794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002511 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00254 Bma_Chr15 FPKM 1.366149 1.314037 1.846168 2.239953 3.725054 3.353529 2.577014 3.450772 1.889848 4.332174