Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00258 ATGTCTCAGGTTGATATCAGGAACGCTTCCAAGCGAGCTCGAACTGATGGTAGCCGCAGGGAAGATGATTGGACATGTCCTAGTTGTGGGAATGTCAATTTTTCATTTAGGACAACATGCAACATGCGGAATTGTACACAGCCAAGACCAGCTGATCATAACACTAAATCTGCTCCAAAGCTTGCCCATGCTCCACAGGAGTATTCTTCCCCTGCTTACATGGGTCCTGGTGTCCCACCATCCGTGTATCTGAGTGTGCCACCTTATGGTTCTTCAATTTTTAATAGTCCATCTGCCCCTCCTTATGACATTCCTTTTTCGGGGGGTTCAGCATATCAGTATAACTATGGCAGCCGATATTCTGCAGGCAGCCCCTACAGATCTCTGCACACCTCTGGACCCACACCTTATTCTAATGTATCTATGATGGGGACTAGTGGGATATATGGTATTCCCCCTTTGATAGGTCGGTATGGCTTAGCTTTGCCCATGACTCCTGGCTCAATGTCAATGGGGCCTAGGTCTGTTTTTTTCCCCAACGATAAAGCTCAACAGAACATTGCAGGTATGACACGTGAAAGTGATTGGTCGTGCCCAAAATGTGGAAATATGAATTTTGCATTTCGAACTGTTTGCAATATGAGGAAATGCAATACACCAAGGCCTGGATCCCAGGTCTCAAAATCAGATAAAAATTCTCAACAAAACACTCCAGAGGGCAGCTGGAAATGTGAAAAATGTAACAATATCAACTATCCATTCCGTACAAAGTGCAACAGACAAAATTGCGGAGCTGATAAACCTAATGAGTCTAACGAATTCCCCTCACCCTCTCAGGATGACAAGATCAGGTCTGTCGTTGAGTTGTAG 870 44.94 MSQVDIRNASKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNTKSAPKLAHAPQEYSSPAYMGPGVPPSVYLSVPPYGSSIFNSPSAPPYDIPFSGGSAYQYNYGSRYSAGSPYRSLHTSGPTPYSNVSMMGTSGIYGIPPLIGRYGLALPMTPGSMSMGPRSVFFPNDKAQQNIAGMTRESDWSCPKCGNMNFAFRTVCNMRKCNTPRPGSQVSKSDKNSQQNTPEGSWKCEKCNNINYPFRTKCNRQNCGADKPNESNEFPSPSQDDKIRSVVEL 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2551973 2555556 + Bma013241.1 Bma15g00258 96380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00258 289 MobiDBLite consensus disorder prediction 219 241 - -
Bma15g00258 289 MobiDBLite consensus disorder prediction 9 23 - -
Bma15g00258 289 SUPERFAMILY Ran binding protein zinc finger-like 232 270 IPR036443 -
Bma15g00258 289 PANTHER OS08G0521400 PROTEIN 7 278 - -
Bma15g00258 289 Gene3D - 227 270 - -
Bma15g00258 289 Gene3D - 183 224 - -
Bma15g00258 289 Gene3D - 11 52 - -
Bma15g00258 289 PANTHER ZINC FINGER PROTEIN 7 278 - -
Bma15g00258 289 Pfam Zn-finger in Ran binding protein and others 20 42 IPR001876 -
Bma15g00258 289 Pfam Zn-finger in Ran binding protein and others 238 268 IPR001876 -
Bma15g00258 289 Pfam Zn-finger in Ran binding protein and others 192 222 IPR001876 -
Bma15g00258 289 MobiDBLite consensus disorder prediction 1 23 - -
Bma15g00258 289 SMART zf_4 22 48 IPR001876 -
Bma15g00258 289 SMART zf_4 194 220 IPR001876 -
Bma15g00258 289 SMART zf_4 240 266 IPR001876 -
Bma15g00258 289 SUPERFAMILY Ran binding protein zinc finger-like 187 224 IPR036443 -
Bma15g00258 289 MobiDBLite consensus disorder prediction 265 289 - -
Bma15g00258 289 SUPERFAMILY Ran binding protein zinc finger-like 14 52 IPR036443 -
Bma15g00258 289 MobiDBLite consensus disorder prediction 265 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00258 - - - csv:101214779 456.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00258 Bma-Chr15:2551973 Bma13g00636 Bma-Chr13:15241115 5.07E-06 dispersed
Bma15g00948 Bma-Chr15:35434740 Bma15g00258 Bma-Chr15:2551973 1.58E-08 transposed
Bma14g01844 Bma-Chr14:39411796 Bma15g00258 Bma-Chr15:2551973 5.99E-06 wgd
Bma14g01868 Bma-Chr14:40047170 Bma15g00258 Bma-Chr15:2551973 7.21E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00258 Bma_Chr15 FPKM 17.018692 14.658695 29.908333 28.816202 50.63036 48.273357 49.808716 66.466988 70.988373 67.554794