Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00272 ATGGAACTCACGGATTTGCCGATCAACAAGCAGCCAAACACTGGTTCCCACCTTCTCCAACAAAAGCAGTCGTCTTCTTCGCACCAGCACCGCCACCAGCACCAGGGTGTTGTCTCTTTCGATGGGAGATCAGGAGGTCCTTCGCAAGGCCCATTCATGGGCTCCATCTCCATCCAACCTCCTCTTAACCGTGGAGGAGCTACTCCTGCCGATCCTCTCAATGGCTCTTCTCTTTCTCCTTCTTGTTCCTCTTCCTCCACTTCTCTCTCCACCTCCTCCCCTTCTGCTCCGACATACCTCGTCGACGCTTCTCTCGCCATCTCCACCAGATCGGACTCTCACCACCAAGGTCTCTCTGGAGTCGTTGCCGATTCCGTTAAAAAGAACAGCCACCAACAGCAACAACGAGAACAACAGTTGTCGAGCGTTCCAACGGCGACGCCTAACGCGGCAAAGAGATCCACCAAAGACCGCCACACAAAGGTCGACGGCCGTGGCCGGCGAATCCGGATGCCGGCGGCCTGTGCTGCTAGGGTTTTCCAATTGACCAGAGAATTAGGTCACAAGTCCGACGGTGAGACTATCGAGTGGCTTCTTCAGCAAGCGGAACATGCAATTATCTCCGCGACCGGAACAGGTACAATCCCGGCGAACTTCTCTTCTCTGAACGTCTCGCTTAGGAACAGCGGATCCACGTTATCAGCGCCGCCGTCAAAGTCTGCTCATTCGTTCCACAGCGCTTTGGCTCTAGCACACCATTCTCACTACGAAGAAGGATTCGCTCCCGCTCCTCTGTTGGATTTCATCACCATTACCAACAACAGAAACGGCAACAACACCAAGCTAATCTTATGA 855 53.92 MELTDLPINKQPNTGSHLLQQKQSSSSHQHRHQHQGVVSFDGRSGGPSQGPFMGSISIQPPLNRGGATPADPLNGSSLSPSCSSSSTSLSTSSPSAPTYLVDASLAISTRSDSHHQGLSGVVADSVKKNSHQQQQREQQLSSVPTATPNAAKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEHAIISATGTGTIPANFSSLNVSLRNSGSTLSAPPSKSAHSFHSALALAHHSHYEEGFAPAPLLDFITITNNRNGNNTKLIL 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2657284 2658138 - Bma013251.1 Bma15g00272 96394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00272 284 MobiDBLite consensus disorder prediction 70 96 - -
Bma15g00272 284 PANTHER TRANSCRIPTION FACTOR TCP8 17 262 - -
Bma15g00272 284 MobiDBLite consensus disorder prediction 125 163 - -
Bma15g00272 284 MobiDBLite consensus disorder prediction 1 96 - -
Bma15g00272 284 MobiDBLite consensus disorder prediction 7 33 - -
Bma15g00272 284 MobiDBLite consensus disorder prediction 125 151 - -
Bma15g00272 284 ProSiteProfiles TCP domain profile. 155 209 IPR017887 -
Bma15g00272 284 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 262 IPR005333 GO:0003700
Bma15g00272 284 Pfam TCP family transcription factor 154 246 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00272 - - - jre:109002313 259.996
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00680 Bma15g00272 CCT
Bma06g00680 Bma15g00272 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01629 Bma-Chr7:51889012 Bma15g00272 Bma-Chr15:2657284 6.74E-34 dispersed
Bma14g00579 Bma-Chr14:6236461 Bma15g00272 Bma-Chr15:2657284 2.28E-37 dispersed
Bma14g01851 Bma-Chr14:39881354 Bma15g00272 Bma-Chr15:2657284 2.25E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g516 . . . . . . . Bma15g00272 Cmo04g01112 . Cma04g01042 Cma04g00086 . . . . . . . . . . . . . . . . . . . Cone8ag0594 . . . . . . . . Blo11g00904 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58468 PF03634 TCP 7.10E-37 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00272 Bma_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0