Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00278 CAGGAAGTGGAGCTGCAAGCAGTAGTTACTACGAAATGTTTTTTTGATATCGACATAGGAGGTACTCCTGTTGGTAGAATAACAATTGGCCTCTTCGGAGACGTTGTTCCAAGAACTGTGGAAAATTTTAGAGCCTTGTGCACTGGTAAGCATATCATCCACTATATGTATTTTTTTTGGGAAAAGGGATATGGCTATAAAGGATGCTCCTTCCACAGAATTATCAAAGATTTCATGATTCAGGGTGGTGACTTCACAGAAGGAGATGGAACTGGAGGAGTTAGTATCTACGGTCCGAGTTTTAAAGACGAAAACTTTTCGTTGAAGCACGTTGGACCTGGAGTCTTGAGCATGGCTAATGCTGGACCTGACACTAATGGAAGCCAGTTCTTCATCTGCACTGTGAAGACTCCGTGGTTGGACAATCGCCATGTTGTGTTTGGACAAATTATCGACGGGATGGATCTTGTTCGGAAGCTTGAATCTCAAGAAACAAGCAGGTCCGATTGCCCCAGGTTACCTTGCCGGATAATTAATTGTGGAGAGTTGCCTGCCGAT 558 43.91 QEVELQAVVTTKCFFDIDIGGTPVGRITIGLFGDVVPRTVENFRALCTGKHIIHYMYFFWEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGVSIYGPSFKDENFSLKHVGPGVLSMANAGPDTNGSQFFICTVKTPWLDNRHVVFGQIIDGMDLVRKLESQETSRSDCPRLPCRIINCGELPAD 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2726632 2727720 - Bma030780 Bma15g00278 96400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00278 186 PIRSF Peptidylpro_ismrse 2 186 IPR024936 GO:0003755
Bma15g00278 186 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 IPR002130 GO:0000413|GO:0003755
Bma15g00278 186 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 71 83 IPR002130 GO:0000413|GO:0003755
Bma15g00278 186 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 142 157 IPR002130 GO:0000413|GO:0003755
Bma15g00278 186 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 129 141 IPR002130 GO:0000413|GO:0003755
Bma15g00278 186 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 31 46 IPR002130 GO:0000413|GO:0003755
Bma15g00278 186 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 14 182 IPR002130 GO:0000413|GO:0003755
Bma15g00278 186 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 186 - -
Bma15g00278 186 SUPERFAMILY Cyclophilin-like 6 183 IPR029000 -
Bma15g00278 186 CDD cyclophilin_ABH_like 12 181 - -
Bma15g00278 186 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 66 83 IPR020892 GO:0003755|GO:0006457
Bma15g00278 186 Gene3D - 1 186 IPR029000 -
Bma15g00278 186 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 16 181 IPR002130 GO:0000413|GO:0003755
Bma15g00278 186 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 2 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00278 K03768 PPIB, ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] - twl:119984718 322.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00830 Bma-Chr4:10384455 Bma15g00278 Bma-Chr15:2726632 1.16E-84 dispersed
Bma04g00837 Bma-Chr4:10455073 Bma15g00278 Bma-Chr15:2726632 1.03E-84 dispersed
Bma14g01231 Bma-Chr14:19689339 Bma15g00278 Bma-Chr15:2726632 7.64E-64 dispersed
Bma15g00278 Bma-Chr15:2726632 Bma11g00080 Bma-Chr11:927526 5.22E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012313 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00278 Bma_Chr15 FPKM 1.578947 2.234848 0.0 0.434243 1.362384 0.346166 1.352834 0.0 0.0 0.0