Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00293 ATGCTTATTCTACTTATTATGCAGATTACAGGAAACTTTTCTGTTGTGAAGAAGGCACTCCTTTCAGTTTCATTTATCCTCCAGGGCGGCCACTCAGTTGAGGCATCTGGCTCTGATGCTACTACACCTGTTGGAAATGTTCCCAATGCTTATGATATTCCTGCTCAAGTTGATCCTTTTCCTCAAAAGGGATATACATCCGGTAGACAGGCTGCAGATTATCATCCGAGGGATTATAATTCTATTCAAGGGCATGATGGTCACAGAATGACAGTGGAAGAGGACGTGGTGTTTAAGTTGTTATGCCACTTTGATAAAGTTGGTAATTTGATAGGGAAAGGCGGTCATGTAGTAAAAGCTCTGCAAAATGAAACTGGTGCATATATTAAGATTGTTGATGCTGTACCTGATTCAGATGAACGCATTGTCGTCATATCAGCACGAGAGAGTATGGAGCAAATGCCTTCTCCAGCACAAGAAGCTGTTATTCGTGTGCATACTCGACTTGCAGATCTTGGATTTGAACCTGGTTCTCCAGTTGTTGCTAGGCTTCTTGTGCATTCACAGCATATTGGTTATTTACTGGGCAAAGGAGGTTTCATTATTCATGAAATGAGAAGAGCTACTGGTGCTAGCATACATGTTGTCTCAAAGGAACAAGTTCCTAAGTGTGTTTCTCAGAATGATGAAGTGGTACAGATTGCAGGAAAATTGCATTCTGTACAAGATGCTTTATTTCATATAACCAGCAGGTTGCGGGAAAGCATATTCCCATTGAGGACACCCCCACCAAATTTAAATGGCCAATCTTATTTGCCTCCTTTTTCAGAAGCACCTTCCCCATTGTTTAGGCCAAGGCATAACCCGCCATCACCCGGACATTACAGTTTCCCATCTGGGATGCCTCACATGAACGATCGATCTTTCATTCCATCTCAACCGTATGATCATAACCTTGCATATTCTCATGGTATCGATCACACTGGTTCTAACCAGGCCCAAATTCCCCATCCTTACAGTGTTGAGAGAGGACCCTCTCACGCATTTGAGCGACCATCTTCTCCGAGATCATGGACTTCCCAGGCAGTCAACAATAGGTTGCCATCAAGAACTTCAGAAGCTAGTTTCAGCATGGCTTCAAGAAATGGAAATTTGAGCTGTGCAAATCAATTGCCATTTCCCGACAACACGTCTGTAGAGATAGTTATCCCTCAGAATTTGTTGAGCTATGTTTATGGAGACAACCATAAAAATCTAGATCACATACGACAGATTTCAGAAGCAAATGTGATGGTTTATGATCCAAAACCCCGGACATCAGAAGGTAAAGTCGTACTGTCTGGCTCATCCAATAGAGTCCGGGCTGCTCAGAGACTCGTTCATGCCTTCATCTTGTGCGGCCGGTCGCAGAGTTAA 1416 43.22 MLILLIMQITGNFSVVKKALLSVSFILQGGHSVEASGSDATTPVGNVPNAYDIPAQVDPFPQKGYTSGRQAADYHPRDYNSIQGHDGHRMTVEEDVVFKLLCHFDKVGNLIGKGGHVVKALQNETGAYIKIVDAVPDSDERIVVISARESMEQMPSPAQEAVIRVHTRLADLGFEPGSPVVARLLVHSQHIGYLLGKGGFIIHEMRRATGASIHVVSKEQVPKCVSQNDEVVQIAGKLHSVQDALFHITSRLRESIFPLRTPPPNLNGQSYLPPFSEAPSPLFRPRHNPPSPGHYSFPSGMPHMNDRSFIPSQPYDHNLAYSHGIDHTGSNQAQIPHPYSVERGPSHAFERPSSPRSWTSQAVNNRLPSRTSEASFSMASRNGNLSCANQLPFPDNTSVEIVIPQNLLSYVYGDNHKNLDHIRQISEANVMVYDPKPRTSEGKVVLSGSSNRVRAAQRLVHAFILCGRSQS 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2865369 2869992 + Bma013270.1 Bma15g00293 96415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00293 471 Gene3D - 94 256 - -
Bma15g00293 471 CDD KH-I 398 461 - -
Bma15g00293 471 ProSiteProfiles Type-1 KH domain profile. 179 248 - -
Bma15g00293 471 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 174 256 IPR036612 GO:0003723
Bma15g00293 471 CDD PCBP_like_KH 181 249 - -
Bma15g00293 471 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 7 313 - -
Bma15g00293 471 SMART kh_6 395 465 IPR004087 GO:0003676
Bma15g00293 471 SMART kh_6 94 170 IPR004087 GO:0003676
Bma15g00293 471 SMART kh_6 178 253 IPR004087 GO:0003676
Bma15g00293 471 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 393 464 IPR036612 GO:0003723
Bma15g00293 471 CDD PCBP_like_KH 97 166 - -
Bma15g00293 471 ProSiteProfiles Type-1 KH domain profile. 396 460 - -
Bma15g00293 471 MobiDBLite consensus disorder prediction 340 376 - -
Bma15g00293 471 Pfam KH domain 182 249 IPR004088 GO:0003723
Bma15g00293 471 Pfam KH domain 99 147 IPR004088 GO:0003723
Bma15g00293 471 Pfam KH domain 399 461 IPR004088 GO:0003723
Bma15g00293 471 ProSiteProfiles Type-1 KH domain profile. 95 162 - -
Bma15g00293 471 MobiDBLite consensus disorder prediction 352 376 - -
Bma15g00293 471 PANTHER OS09G0498600 PROTEIN 7 313 - -
Bma15g00293 471 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 93 166 IPR036612 GO:0003723
Bma15g00293 471 Gene3D K Homology domain, type 1 395 465 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00293 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - qsu:112029703 526.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02568 Bma-Chr1:83296114 Bma15g00293 Bma-Chr15:2865369 5.17E-59 dispersed
Bma14g01457 Bma-Chr14:28071289 Bma15g00293 Bma-Chr15:2865369 1.10E-31 dispersed
Bma15g00293 Bma-Chr15:2865369 Bma01g01048 Bma-Chr1:11032732 2.75E-29 transposed
Bma15g00293 Bma-Chr15:2865369 Bma02g00428 Bma-Chr2:6460431 9.77E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g929 . . . . . . . Bma15g00293 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0574 Cone9ag0580 . . . . . . . . . . . . . Cmo04g02901 . . . . Car15g00261 Cpe13g00957 . . . . . . . . . . . . . . . . . . .
Vvi9g1015 . . . Bda10g00905 . Bpe10g00731 . . . Cmo17g00615 . . . . . Cpe12g00536 . . . . . . . . . . . . . . . Cone20ag1391 . . . Lsi02g02835 Csa07g02284 . Cme01g02737 . . . . . . . Bma15g00293 Sed06g0791 . . . Cma17g00632 . Car17g00596 . . Bhi09g00223 Tan06g0030 Cmetu01g1823 . Hepe03g2128 . . Cla09g00148 Cam09g0161 Cec09g0165 Cco09g0162 Clacu09g0167 . Cre09g0152 . . Chy01g02107 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010391 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00293 Bma_Chr15 FPKM 6.509786 5.963635 21.790415 23.635168 15.317002 12.014779 14.001929 9.739912 9.66281 9.642473