Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00330 ATGGCAGGTTTAGCTCCAGAAGGATCCCAGTTTGATGCCAATCAGTATGATTCCAAAATGAGTGAGATACAATCTGAAGGACAGGATTTCTTCACCTCTTATGATGAAGTTTATGAAAGCTTTGATTCTATGGGTTTACAAGAAAACCTGCTGAGGGGCATTTATGCCTATGGTTTTGAGAAGCCGTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTGATTCAACAGGCTCAATCTGGAACTGGAAAAACTGCAACCTTTTGCTCTGGCATTTTGCAGCAACTCGATTATGGCTTAGTCCAGTGCCAGGCACTGGTGCTTGCACCTACCAGGGAACTGGCTCAACAGATTGAGAAGGTCATGCGAGCTCTAGGTGATTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGAGGGACCAGTGTACGTGAGGATCAACGCATTCTTCAAGCCGGGGTGCATGTTGTTGTTGGTACTCCAGGTCGAGTATTTGACATGTTGCAAAGACAGTCTCTCCGCCCAGACTACATTAAGATGTTTGTTTTGGATGAGGCTGATGAGATGCTTTCACGCGGATTCAAGGATCAGATTTACGACATTTTCCAGCTTTTGCCATCAGAAGTTCAAGTTGGAGTTTTCTCAGCAACAATGCCACCTGAAGCTCTGGAAATCACGAGGAAGTTTATGAAGAAGCCTGTAAGAATCTTGGTGAAGCGTGATGAACTTACTTTGGAAGGTATCAAGCAGTTCTACGTTGATGTTGACAAGGAAGATTGGAAACTTGACACACTATGTGATCTTTATGAGACTCTGGCCATCACCCAGAGCGTCATCTTTGTCAACACACGACGGAAGGTGGATTGGCTGACAGACAAGATGCGCAGTCGAGATCACACAGTATCAGCCACCCATGGAGATATGGACCAGAACACCAGAGATATAATTATGCGAGAATTCCGCTCTGGGTCTTCTCGTGTTCTCATAACAACCGATCTTTTGGCTCGTGGTATTGATGTCCAGCAAGTTTCGCTTGTTATAAACTACGATCTGCCGACACAACCAGAAAATTACCTTCATCGAATTGGTCGAAGCGGACGGTTTGGAAGAAAAGGGGTAGCCATCAACTTTGTGACAAGCGATGATGGTCGAATGTTATCAGACATTCAGAAGTTCTACAACGTGGTAATTGAGGAGCTGCCTGCAAATGTTGCTGATCTCCTGTGA 1239 45.04 MAGLAPEGSQFDANQYDSKMSEIQSEGQDFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLQRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSEVQVGVFSATMPPEALEITRKFMKKPVRILVKRDELTLEGIKQFYVDVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDGRMLSDIQKFYNVVIEELPANVADLL 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3207888 3209581 + Bma013308.1 Bma15g00330 96452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00330 412 CDD DEADc_EIF4A 44 241 - -
Bma15g00330 412 Gene3D - 29 247 IPR027417 -
Bma15g00330 412 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 67 IPR014014 GO:0003724
Bma15g00330 412 Pfam DEAD/DEAH box helicase 64 225 IPR011545 GO:0003676|GO:0005524
Bma15g00330 412 SMART ultradead3 58 255 IPR014001 -
Bma15g00330 412 PANTHER RNA HELICASE 23 412 - -
Bma15g00330 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 392 IPR027417 -
Bma15g00330 412 SMART helicmild6 292 373 IPR001650 -
Bma15g00330 412 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 186 194 IPR000629 -
Bma15g00330 412 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 240 IPR014001 -
Bma15g00330 412 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 412 - -
Bma15g00330 412 CDD SF2_C_DEAD 252 382 - -
Bma15g00330 412 Pfam Helicase conserved C-terminal domain 265 373 IPR001650 -
Bma15g00330 412 Gene3D - 248 412 IPR027417 -
Bma15g00330 412 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 251 412 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00348 Bma-Chr2:5613205 Bma15g00330 Bma-Chr15:3207888 9.57E-26 dispersed
Bma02g00533 Bma-Chr2:10491014 Bma15g00330 Bma-Chr15:3207888 0 dispersed
Bma10g00922 Bma-Chr10:18648748 Bma15g00330 Bma-Chr15:3207888 0 dispersed
Bma10g00926 Bma-Chr10:18847966 Bma15g00330 Bma-Chr15:3207888 0 dispersed
Bma15g00923 Bma-Chr15:33243978 Bma15g00330 Bma-Chr15:3207888 2.23E-06 dispersed
Bma02g00286 Bma-Chr2:3318575 Bma15g00330 Bma-Chr15:3207888 1.77E-60 transposed
Bma10g00062 Bma-Chr10:597551 Bma15g00330 Bma-Chr15:3207888 1.02E-67 transposed
Bma15g00330 Bma-Chr15:3207888 Bma09g00970 Bma-Chr9:49221058 2.57E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00330 K03257 - csv:101223055 783.867