Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00335 ATGTTGAAAGAATCAAGGTTGATTGACGGCTTGTTTCCGCTTTTATCGGAAGGTGGAAAGCCGAACTCAGAACTCAAACTTCGATTCATGTTATGGTTTAGGCCAGCAGAACATGATGTGAGCTGGAAGAAGATACTTGGCAATGGAGATTTCAAGGGCCTAAGAAATGCAACCTTTCCGCAAAGGTCAAACTGTCAGGTTGTCTTATATCAAGATGCTCATCACCTTTCTACATTTCAGCCTCCATTTCGGCAGTCCGGAGCTCCTAGAAGGCTTTGGGAAGATGTATACAAGGCCATTGACAATGCAAAAATTTTGATTTACATAGCAGGCTGGTCATTCAATCCCAATACAGTCTTGGTAAATCAACAAACTGTAACTCAAATTCTTCATTCTAACTTCTTAAGAAAGCTAATTACATTCTTTTCACAGGTTAGAGACTCTGATCATACTAATATTCCGTATGCAGTGGGAGTTACGCTTGGTGACTTGTTGAAGCTGAAAGCTGAGGAAGGAGTCGCCGTCAAAATCATGATTTGGGATGACGAAACGTCACTTCCATTCATCAAAAACGAAGGAATAATGAGAACTCATGAGCAAGATGCATTAACCTATTTCAAGAACACGAAAGTTGTCTGCAGATTGTGTCCAAAATTGCACCCTTTGTCTCTCCCACTCTTCTCTCACCACCAGAAGACAATTATTCTTGATACTCAATCTCACATTGAACCAAACCGCAGAGAAATTATGAGTTTTCTTGGCGGTTTGGATCTTTGTGATGGACGTTATGATACCGAGCAACACTCACTGTTCCACACTCTAAAAAAGCAATCCCATAATTTAGACTTCTATCAAACAAGCATAGCAGATGCCAAGATCAGCCATGGAGGGCCAAGGGAGCCTTGGCATGATGCTCATGCTTGTGTCACAGGCGAAGCTGCCTGTGATATCTTAACAAATTTTGAGCAGAGGTGGGCTAAGCAATGTGATGCATCTTCTCTAGTCCCCACTGCCACCCTTATGAATCTCACACTCAAACCAGAAATAAGTAGAAACAACTCTTCACAGAGGAATTGGAAAGCACAAGTTTTCAGATCAATCGATCATTTGTCTGTTACACAATTGTCAAAAACATCAACTGTAGAGAAAAGCATCCATGATGCTTACGTGGAAGCAATACGACGGGCAGAGATGTTCATATATATTGAAAACCAGTACTTCATTGGAGGGTGCCATATGTGGGAGAGAGATTTGCATTGTGGGTGCAGTAATTTGATACCTGTCGAGATAGCACTAAAGATTGTCAGCAAGATCAAGGCAAGAGAAAGATTCTCAGTCTACATAGTAATACCAATGTGGCCAGAGGGAGTGCCTGAGAGTGAAACAGTTCAGGACATTTTGCATTGGAGTAGAGAAACAATGGCAATGATGTATAGGTTGATCGGCGAAGCAATGCGAGAGTATGGCGATACTGGTCACCCGAGAGACTACCTGAACTTCTTCTGTCTTGCAAACAGGGAGGAGGGAGCCAATGAAGAGTTCGTTCCTCCATATTCTCCTCAACCGGCAACTCAATATTTCAATGCGCAAATCAATAGAAGGTTCATGATTTATGTCCACTCCAAACTCATGATAGTGGACGACCTGTACATTATAATAGGATCTGCAAATGTGAACCAGCGATCAATGGACGGGCAGAGAGACACAGAGATCGCCATCGGATGCTACCAAACAGAAAATGGCGGAGATACAAAGAGCCTTGGAGAAATTTTTTCATACAGGCTGTCTCTTTGGTATGAACATACTGGAGGTCTAGCCGAGGAGATTTTCCAAGAGCCACATAGTTTGGAATGTGTACAGAAAATGCGTAACATAGGAGACCAGATGTGGAAAATATACAGCGGAGAAGAGATTATCGACATGAAAGGCGTTCATCTTGTCACATACCCAATAATTGTCAAACAGGATGGTTCTCTTGAAGATCGAGCTGATTGTGGAGGTCTATTTCCAGATACAAAGTGCCAGGTAAAGGGCAAAAGATCGACATTAATGCCAACCATCTTTACCACATAG 2073 42.26 MLKESRLIDGLFPLLSEGGKPNSELKLRFMLWFRPAEHDVSWKKILGNGDFKGLRNATFPQRSNCQVVLYQDAHHLSTFQPPFRQSGAPRRLWEDVYKAIDNAKILIYIAGWSFNPNTVLVNQQTVTQILHSNFLRKLITFFSQVRDSDHTNIPYAVGVTLGDLLKLKAEEGVAVKIMIWDDETSLPFIKNEGIMRTHEQDALTYFKNTKVVCRLCPKLHPLSLPLFSHHQKTIILDTQSHIEPNRREIMSFLGGLDLCDGRYDTEQHSLFHTLKKQSHNLDFYQTSIADAKISHGGPREPWHDAHACVTGEAACDILTNFEQRWAKQCDASSLVPTATLMNLTLKPEISRNNSSQRNWKAQVFRSIDHLSVTQLSKTSTVEKSIHDAYVEAIRRAEMFIYIENQYFIGGCHMWERDLHCGCSNLIPVEIALKIVSKIKARERFSVYIVIPMWPEGVPESETVQDILHWSRETMAMMYRLIGEAMREYGDTGHPRDYLNFFCLANREEGANEEFVPPYSPQPATQYFNAQINRRFMIYVHSKLMIVDDLYIIIGSANVNQRSMDGQRDTEIAIGCYQTENGGDTKSLGEIFSYRLSLWYEHTGGLAEEIFQEPHSLECVQKMRNIGDQMWKIYSGEEIIDMKGVHLVTYPIIVKQDGSLEDRADCGGLFPDTKCQVKGKRSTLMPTIFTT 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3307069 3309249 - Bma013315.1 Bma15g00335 96457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00335 690 Gene3D Endonuclease Chain A 374 584 - -
Bma15g00335 690 SUPERFAMILY Phospholipase D/nuclease 53 331 - -
Bma15g00335 690 SMART pld_4 535 562 IPR001736 GO:0003824
Bma15g00335 690 SMART pld_4 225 262 IPR001736 GO:0003824
Bma15g00335 690 Pfam Phospholipase D Active site motif 227 262 IPR001736 GO:0003824
Bma15g00335 690 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 535 562 IPR001736 GO:0003824
Bma15g00335 690 PANTHER PHOSPHOLIPASE D ALPHA 4 1 690 - -
Bma15g00335 690 Pfam PLD-like domain 455 573 IPR025202 -
Bma15g00335 690 PANTHER PHOSPHOLIPASE D 1 690 IPR015679 -
Bma15g00335 690 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 225 262 IPR001736 GO:0003824
Bma15g00335 690 SUPERFAMILY Phospholipase D/nuclease 361 608 - -
Bma15g00335 690 Pfam Phospholipase D C terminal 607 679 IPR024632 -
Bma15g00335 690 Gene3D Endonuclease Chain A 71 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00335 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - csv:101206396 998.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00903 Bma-Chr9:48415787 Bma15g00335 Bma-Chr15:3307069 0 dispersed
Bma12g00109 Bma-Chr12:1720156 Bma15g00335 Bma-Chr15:3307069 6.58E-157 dispersed
Bma14g01317 Bma-Chr14:24301806 Bma15g00335 Bma-Chr15:3307069 3.25E-15 dispersed
Bma15g00335 Bma-Chr15:3307069 Bma10g00806 Bma-Chr10:13224797 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g191 . . . Bda10g00858 . Bpe10g00689 . . . . Cma01g00068 . Car01g00054 . Sed06g2216 . . Bhi01g03327 Tan04g2749 Cmetu04g0608 Lac12g2427 Hepe02g1477 . . Cla07g01298 Cam07g1199 Cec07g1483 Cco07g1442 Clacu07g1366 Cmu07g1343 Cre07g1725 . . . . . . Chy04g00644 . . . . . . . . Bma15g00335 . Cmo01g00070 . . . . . Cpe02g01720 . . . . . . . . . . . . . . . Lsi07g00563 Csa03g04088 . Cme04g01195
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 78.6 0.0e+00 1374.8
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT1G52570 72.2 0.0e+00 1218.0
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT1G52570 62.6 1.9e-307 1051.6
Bma15g00411 . 1 252 Phospholipase D Gene Family (Wang group) AT1G52570 69.5 2.8e-112 403.3
Bma15g00335 . 1 690 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 7.1e-240 827.0
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.5 0.0e+00 1396.7
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT3G15730 71.6 0.0e+00 1202.2
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT3G15730 63.5 8.4e-311 1062.8
Bma15g00411 . 1 254 Phospholipase D Gene Family (Wang group) AT3G15730 69.8 2.5e-113 406.8
Bma09g00903 CCT,ECH 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.4 6.8e-291 996.5
Bma10g00806 CCT,ECH 40 775 Phospholipase D Gene Family (Wang group) AT5G25370 59.7 2.1e-271 931.8
Bma07g00594 . 38 802 Phospholipase D Gene Family (Wang group) AT5G25370 58.4 7.3e-269 923.3
Bma15g00411 . 73 251 Phospholipase D Gene Family (Wang group) AT5G25370 50.5 2.3e-57 220.7
Bma05g01121 . 65 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.7 0.0e+00 1421.0
Bma12g00109 . 15 916 Phospholipase D Gene Family (Wang group) AT2G42010 64.1 0.0e+00 1195.3
Bma05g00190 . 9 864 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.2e-262 903.3
Bma05g00178 . 12 843 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 1.0e-250 863.6
Bma05g01121 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.4 0.0e+00 1251.9
Bma12g00109 . 81 916 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 0.0e+00 1085.5
Bma05g00190 . 61 864 Phospholipase D Gene Family (Wang group) AT4G00240 54.5 1.5e-256 882.5
Bma05g00178 . 64 843 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 3.1e-246 848.2
Bma05g01121 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 9.1e-244 839.7
Bma12g00109 . 13 700 Phospholipase D Gene Family (Wang group) AT4G11830 58.9 9.1e-236 813.1
Bma05g01121 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 65.3 0.0e+00 1138.6
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11840 59.9 0.0e+00 1103.6
Bma05g01121 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1198.7
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11850 63.2 0.0e+00 1177.9
Bma05g00190 . 1 692 Phospholipase D Gene Family (Wang group) AT4G35790 63.3 6.0e-273 936.8
Bma05g00178 . 4 671 Phospholipase D Gene Family (Wang group) AT4G35790 58.9 6.2e-246 847.0
Bma14g01317 . 37 1084 Phospholipase D Gene Family (Wang group) AT3G05630 64.7 0.0e+00 1389.4
Bma05g01024 . 1 562 Phospholipase D Gene Family (Wang group) AT3G05630 58.5 2.6e-179 626.3
Bma14g01317 . 19 961 Phospholipase D Gene Family (Wang group) AT3G16785 65.5 0.0e+00 1258.4
Bma05g01024 . 1 439 Phospholipase D Gene Family (Wang group) AT3G16785 66.6 1.0e-169 594.3
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.5 0.0e+00 1396.7
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT3G15730 71.6 0.0e+00 1202.2
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT3G15730 63.5 8.4e-311 1062.8
Bma15g00411 . 1 254 Phospholipase D Gene Family (Wang group) AT3G15730 69.8 2.5e-113 406.8
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 78.6 0.0e+00 1374.8
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT1G52570 72.2 0.0e+00 1218.0
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT1G52570 62.6 1.9e-307 1051.6
Bma15g00411 . 1 252 Phospholipase D Gene Family (Wang group) AT1G52570 69.5 2.8e-112 403.3
Bma05g01121 . 65 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.7 0.0e+00 1421.0
Bma12g00109 . 15 916 Phospholipase D Gene Family (Wang group) AT2G42010 64.1 0.0e+00 1195.3
Bma05g00190 . 9 864 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.2e-262 903.3
Bma05g00178 . 12 843 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 1.0e-250 863.6
Bma05g01121 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.4 0.0e+00 1251.9
Bma12g00109 . 81 916 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 0.0e+00 1085.5
Bma05g00190 . 61 864 Phospholipase D Gene Family (Wang group) AT4G00240 54.5 1.5e-256 882.5
Bma05g00178 . 64 843 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 3.1e-246 848.2
Bma05g01121 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1198.7
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11850 63.2 0.0e+00 1177.9
Bma05g01121 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 9.1e-244 839.7
Bma12g00109 . 13 700 Phospholipase D Gene Family (Wang group) AT4G11830 58.9 9.1e-236 813.1
Bma05g01121 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 65.3 0.0e+00 1138.6
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11840 59.9 0.0e+00 1103.6
Bma05g00190 . 1 692 Phospholipase D Gene Family (Wang group) AT4G35790 63.3 6.0e-273 936.8
Bma05g00178 . 4 671 Phospholipase D Gene Family (Wang group) AT4G35790 58.9 6.2e-246 847.0
Bma15g00335 . 1 690 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 7.1e-240 827.0
Bma09g00903 CCT,ECH 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.4 6.8e-291 996.5
Bma10g00806 CCT,ECH 40 775 Phospholipase D Gene Family (Wang group) AT5G25370 59.7 2.1e-271 931.8
Bma07g00594 . 38 802 Phospholipase D Gene Family (Wang group) AT5G25370 58.4 7.3e-269 923.3
Bma15g00411 . 73 251 Phospholipase D Gene Family (Wang group) AT5G25370 50.5 2.3e-57 220.7
Bma14g01317 . 19 961 Phospholipase D Gene Family (Wang group) AT3G16785 65.5 0.0e+00 1258.4
Bma05g01024 . 1 439 Phospholipase D Gene Family (Wang group) AT3G16785 66.6 1.0e-169 594.3
Bma14g01317 . 37 1084 Phospholipase D Gene Family (Wang group) AT3G05630 64.7 0.0e+00 1389.4
Bma05g01024 . 1 562 Phospholipase D Gene Family (Wang group) AT3G05630 58.5 2.6e-179 626.3
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.5 0.0e+00 1396.7
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT3G15730 71.6 0.0e+00 1202.2
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT3G15730 63.5 8.4e-311 1062.8
Bma15g00411 . 1 254 Phospholipase D Gene Family (Wang group) AT3G15730 69.8 2.5e-113 406.8
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 78.6 0.0e+00 1374.8
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT1G52570 72.2 0.0e+00 1218.0
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT1G52570 62.6 1.9e-307 1051.6
Bma15g00411 . 1 252 Phospholipase D Gene Family (Wang group) AT1G52570 69.5 2.8e-112 403.3
Bma09g00903 CCT,ECH 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.4 6.8e-291 996.5
Bma10g00806 CCT,ECH 40 775 Phospholipase D Gene Family (Wang group) AT5G25370 59.7 2.1e-271 931.8
Bma07g00594 . 38 802 Phospholipase D Gene Family (Wang group) AT5G25370 58.4 7.3e-269 923.3
Bma15g00411 . 73 251 Phospholipase D Gene Family (Wang group) AT5G25370 50.5 2.3e-57 220.7
Bma15g00335 . 1 690 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 7.1e-240 827.0
Bma05g01121 . 65 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.7 0.0e+00 1421.0
Bma12g00109 . 15 916 Phospholipase D Gene Family (Wang group) AT2G42010 64.1 0.0e+00 1195.3
Bma05g00190 . 9 864 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.2e-262 903.3
Bma05g00178 . 12 843 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 1.0e-250 863.6
Bma05g01121 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.4 0.0e+00 1251.9
Bma12g00109 . 81 916 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 0.0e+00 1085.5
Bma05g00190 . 61 864 Phospholipase D Gene Family (Wang group) AT4G00240 54.5 1.5e-256 882.5
Bma05g00178 . 64 843 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 3.1e-246 848.2
Bma05g01121 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1198.7
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11850 63.2 0.0e+00 1177.9
Bma05g01121 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 9.1e-244 839.7
Bma12g00109 . 13 700 Phospholipase D Gene Family (Wang group) AT4G11830 58.9 9.1e-236 813.1
Bma05g01121 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 65.3 0.0e+00 1138.6
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11840 59.9 0.0e+00 1103.6
Bma05g00190 . 1 692 Phospholipase D Gene Family (Wang group) AT4G35790 63.3 6.0e-273 936.8
Bma05g00178 . 4 671 Phospholipase D Gene Family (Wang group) AT4G35790 58.9 6.2e-246 847.0
Bma14g01317 . 19 961 Phospholipase D Gene Family (Wang group) AT3G16785 65.5 0.0e+00 1258.4
Bma05g01024 . 1 439 Phospholipase D Gene Family (Wang group) AT3G16785 66.6 1.0e-169 594.3
Bma14g01317 . 37 1084 Phospholipase D Gene Family (Wang group) AT3G05630 64.7 0.0e+00 1389.4
Bma05g01024 . 1 562 Phospholipase D Gene Family (Wang group) AT3G05630 58.5 2.6e-179 626.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012312 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00335 Bma_Chr15 FPKM 5.855725 5.184435 15.619356 15.017307 11.002112 11.367913 10.2787 14.867311 12.358983 13.862735