Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00345 ATGGCGGCGTTCAGCTCCTTTGATGACCAGCCACGGGATTATGGATTTATTTGTGGGTCTAAAAGCTACGCAGACACATCAGTTGATGAAGATGGAGTTTCCGTAATTCTATCGGGAGAGTCTGAGAATAATGGCTACAAAGCAAAAAGTACACAATTTCTTAATGGATTCCATCAAAATTCAGCCGGTCCAAATAAATATCCACAAGAAAAACTTTCAGACACAAAAACCTGTTCTAGGAAGAGATCCAGGGATCAGATTAAGGTCAAAAACACAGGTTTTGATTCTGTGGCCCCATTTTTAAGCAGCTGTAATAGAGAACGTGGATTCAGGATAATATCTGAAAATTCACCAAAGAGGAAGAAACAAGTATTGGAAAAGCGTCCAAAATCAATAAGTATCAACTTCCAACAGCAAACAGCTTCATCAATATCTTCTTCCATTGAAGAACCAGATCAAGAAGCCATTGCACAAATGAAGGAGATGATTTATAGAGCAGCAGCTTTTAGGCCAGTGAACTTGGGTTTAGAGGCAGTGGAAAAGCCGAAGAGGAAGAACGTTAGAATATCATCTGATCCACAAACTGTAGCAGCCAGACAAAGGAGGGAGAGAATAGGAGAGAGAATTAGGGTTTTGCAGAAATTGGTTCCTGGTGGGAGCAAGATGGACACTGCATCCATGTTAGATGAGGCTGCAAATTACCTCAAATTCCTCAACTCACAGATTAAGGCTCTTGAAAATCTTGGGCAAGAGATTGACACCATGAATAAGTCTCCACCTTCAAGCATTGCTTTCTCGTTCAACCCATCTTTTCCCATGCAAACCCACTTTTCAATCCAACACCCTAATCACATCCACTCTTTTCAGAAATGA 873 40.89 MAAFSSFDDQPRDYGFICGSKSYADTSVDEDGVSVILSGESENNGYKAKSTQFLNGFHQNSAGPNKYPQEKLSDTKTCSRKRSRDQIKVKNTGFDSVAPFLSSCNRERGFRIISENSPKRKKQVLEKRPKSISINFQQQTASSISSSIEEPDQEAIAQMKEMIYRAAAFRPVNLGLEAVEKPKRKNVRISSDPQTVAARQRRERIGERIRVLQKLVPGGSKMDTASMLDEAANYLKFLNSQIKALENLGQEIDTMNKSPPSSIAFSFNPSFPMQTHFSIQHPNHIHSFQK 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3390686 3391558 + Bma013325.1 Bma15g00345 96467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00345 290 Coils Coil 228 248 - -
Bma15g00345 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Bma15g00345 290 SMART finulus 195 244 IPR011598 GO:0046983
Bma15g00345 290 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 25 287 IPR045843 GO:0003700|GO:0006355
Bma15g00345 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 252 IPR036638 GO:0046983
Bma15g00345 290 Pfam Helix-loop-helix DNA-binding domain 199 238 IPR011598 GO:0046983
Bma15g00345 290 Gene3D - 194 259 IPR036638 GO:0046983
Bma15g00345 290 PANTHER TRANSCRIPTION FACTOR BHLH87 25 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00345 Bma-Chr15:3390686 Bma05g00057 Bma-Chr5:2394198 2.78E-17 dispersed
Bma10g00756 Bma-Chr10:12002439 Bma15g00345 Bma-Chr15:3390686 4.55E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58474 PF00010 HLH 2.90E-05 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00345 - - qsu:112039421 285.034