Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00363 ATGACTAGAAAGAAGGTGAAGCTTTCGTACATAACTAATGATTCAGCAAGAAAAGCAACGTTTAAGAAAAGGAAGAAGGGACTGATGAAGAAGGTGAGCGAACTCACGACCCTTTGCGGGATCGATGCTTGCGCAATCATTTACAGCCCCTACGACTCTCAGCCTGAGGTGTGGCCTTCTGCCGGGGGAGTCCAGCGCGTGGTGGCTCAGTTCAAGAAAATGCCGGAGATGGAGCAGAGCAAGAAGATGGTGAACCAAGAGAGCTTTCTTCGCCAGCGGATCGCCAAAGCACAAGAGATGTCTAAGAAGCAAAGGAAGGAGAATCGAGAGAAGGAGATTCGCCAATTGATGTTTGACTGCCTAACCGGGACAAAGGACCTGAACAGCATGGGCATGGTGGAGCTGAAAGAGACGGGATGGTTGGTTGATAGCACACTCAAGGATGTAAACAAGAGGATCGAGTCACTCCAGAAGGAGGCCGCGAGTCGTACGAACCTCGCCCACCCCGTCAATCCAGCTGTGGGCGGAGGCGGCAGAGCGGTAGCAGAAGATGGTTTCGGGGGTAAAGGATGGGAGAAGGAGGAGCCATGGTTCATGGATATTGGCTTTGGTGGGGACGACATGATTCTGCCTCTTGCAGATCCTAATCTCGACTCTCTCTATCTTTGGTCCAACGCGTTCTTTCCCTGA 690 51.74 MTRKKVKLSYITNDSARKATFKKRKKGLMKKVSELTTLCGIDACAIIYSPYDSQPEVWPSAGGVQRVVAQFKKMPEMEQSKKMVNQESFLRQRIAKAQEMSKKQRKENREKEIRQLMFDCLTGTKDLNSMGMVELKETGWLVDSTLKDVNKRIESLQKEAASRTNLAHPVNPAVGGGGRAVAEDGFGGKGWEKEEPWFMDIGFGGDDMILPLADPNLDSLYLWSNAFFP 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3835191 3835880 - Bma013340.1 Bma15g00363 96485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00363 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bma15g00363 229 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 165 - -
Bma15g00363 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bma15g00363 229 Coils Coil 146 166 - -
Bma15g00363 229 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bma15g00363 229 Coils Coil 94 114 - -
Bma15g00363 229 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bma15g00363 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bma15g00363 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma15g00363 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma15g00363 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma15g00363 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma15g00363 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00881 Bma-Chr1:8264151 Bma15g00363 Bma-Chr15:3835191 1.16E-68 dispersed
Bma01g02015 Bma-Chr1:74728054 Bma15g00363 Bma-Chr15:3835191 2.06E-31 dispersed
Bma14g01938 Bma-Chr14:41326510 Bma15g00363 Bma-Chr15:3835191 3.04E-159 dispersed
Bma15g00363 Bma-Chr15:3835191 Bma14g01110 Bma-Chr14:13960088 4.01E-13 dispersed
Bma15g00363 Bma-Chr15:3835191 Bma02g00290 Bma-Chr2:3336861 4.46E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58477 PF00319 SRF-TF 1.40E-18 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00363 - - vvi:100254549 283.493