Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00389 ATGTATCATCTCTCACTGGAACCAAATAATGGTCCCTCCCAATTGACTAAGCTTTGCCAAATCCTCATGGAGCAGATTGATAACCACAATGGTCAGGAACACATGATTGTCATCAGACAGAGACAGAGTGAGGATGCATTATCAAGTTCATTTTATGATGAACGACGACTGGTGGGAATTCCGCATCATGATGGTAGACCATCAAATAGCCCACAAGCAGCTACATATTCAATTCCTTCAACCGCAAACCATCTGAACTTTAGAAACTCCCTTAGAAGAGGCGATCTTTATGGTCCACCCGAAAGAAATCCCTTAAATTCTGGGCTGTGGATTTCTATTGAGCTTGTTGTCACTGTGGGACAGATTATTGCATCTATTATCATATTATCTCTATCAAAAAATGAGAAACCACAGGCCCCATTGTTTGCGTGGGTTCTGGGTTACGCAACTGGTTGTGTGGCAACTCTCCCTGTTCTTTATTGGCGTTATCGTAATTGTCTCCGAGATGATGAGCAGCATTCCTCTCAATTGTATCTAGGCTCTTTCCAAAGTAACTCTCCTGAACCTTCATCTTATACAGCTATTTCCATTGGTCAAATGCCAGATGATGAAATTGATCAAAGCACTGAAACCACTCCAAGAACCCCAGAAATAAGAACCTTATGCACACACTGGTTTTGCAGGCTTAATGCATTAATGGACCATTTTAAGATGGCATTGGATGGCTTCTTTGCCGTGTGGTTTGTTGTGGGTAATGTTTGGATCTTTGGAGGTCACTCTTCTCCTTCTGAAGCTCCTAATCTATACAGGCTGTCTTTAGTGTTCCTTACCTTCAGCTGTATTGGATATGCAATGCCATTTGTTATATGTGCCACAATCTGTTGCTGCATGCCTTGCATAATATCCATCTTGGGTATTCGAGATGATCGATTGGAAATTACTGGGGCAACATCGGAATCTATCAATGCTCTTCCTACATATAAGTTCATTTTACAGAAGAACAAGTGTGTCAATGATCATGAAACAAGCACGGTGCCATGTGAAGGTGGAGTTTTGGCTGCAGGTACCAAAAAGGGTCGAGTAATATCAGGTGAAGATGCGGTCTGTTGTATTTGCTTAACGGAATATGCAGACAATGATGAACTGAGAGAACTCCCCTGCTTCCATGTCTTTCACATTGGGTGCATTGATAAATGGTTAAAGATGAATGCATTGTGCCCTCTCTGTAAAAGCTACATCGGTCAGAGCAGTCGCCCGTAG 1260 42.22 MYHLSLEPNNGPSQLTKLCQILMEQIDNHNGQEHMIVIRQRQSEDALSSSFYDERRLVGIPHHDGRPSNSPQAATYSIPSTANHLNFRNSLRRGDLYGPPERNPLNSGLWISIELVVTVGQIIASIIILSLSKNEKPQAPLFAWVLGYATGCVATLPVLYWRYRNCLRDDEQHSSQLYLGSFQSNSPEPSSYTAISIGQMPDDEIDQSTETTPRTPEIRTLCTHWFCRLNALMDHFKMALDGFFAVWFVVGNVWIFGGHSSPSEAPNLYRLSLVFLTFSCIGYAMPFVICATICCCMPCIISILGIRDDRLEITGATSESINALPTYKFILQKNKCVNDHETSTVPCEGGVLAAGTKKGRVISGEDAVCCICLTEYADNDELRELPCFHVFHIGCIDKWLKMNALCPLCKSYIGQSSRP 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4321863 4323638 - Bma013360.1 Bma15g00389 96511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00389 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 417 IPR013083 -
Bma15g00389 419 CDD RING-H2_RNF111_like 368 410 - -
Bma15g00389 419 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 14 415 - -
Bma15g00389 419 Pfam Ring finger domain 369 410 IPR001841 -
Bma15g00389 419 SUPERFAMILY RING/U-box 363 415 - -
Bma15g00389 419 SMART ring_2 369 409 IPR001841 -
Bma15g00389 419 ProSiteProfiles Zinc finger RING-type profile. 369 410 IPR001841 -
Bma15g00389 419 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 14 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00041 Bma-Chr2:391580 Bma15g00389 Bma-Chr15:4321863 2.75E-134 dispersed
Bma14g00672 Bma-Chr14:7287258 Bma15g00389 Bma-Chr15:4321863 3.33E-42 dispersed
Bma14g01932 Bma-Chr14:41238035 Bma15g00389 Bma-Chr15:4321863 2.95E-32 dispersed
Bma15g00027 Bma-Chr15:285755 Bma15g00389 Bma-Chr15:4321863 9.72E-17 dispersed
Bma15g00389 Bma-Chr15:4321863 Bma01g01300 Bma-Chr1:17778344 1.26E-140 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00389 - - jre:109009152 499.59