Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00417 ATGGCTCCGAGGTCTGGAAGAGGGAAGACGAGCAAAGCTAAAGCAGAGAAGAAGAAGAAGGAAGAGAAAGCAGTCGTTCCTAGTGTTGTTGACATTACAGTCGTCACTCCATTTCAGACCCAGCTTGTGCTCAAGGGTATATCCACTGACAAGATTCTCGATGTAAGAAGGCTACTAGCCGAGAATATAGCAACATGCCATCTTACAAACTATTCTCTGTCTCACGAAGTGAAAGGACAGAGATTGAATGACATGGTAGAGGTCACTTCTCTTAAACCCTGTTTGCTGAAAATGGTTGAAGAGGATTACAAGGAAGAAGCTCAAGCGGTTGCGCAAGTGCGGAGGCTGCTTGACATTGTAGCTTGCACCACAAGATTTAGCAAACCGAGACGATCGCCGGCGACAGAGTCACGTGCGAAGAAAAATGGGAAGACCCACCAGCAGGCTAACTCCAGCTCTGGCCCACCTACGCCGTCCGACGGAGTGGGTGAGTCGTTTTCGTCTGAAGCGGCTGTTTCTGTGGTCTCCGATAACTTCGGAATGACCGCCATTCATCCCACTCCGAAGCTCTCCGAATTCTTCGAATTTTTCTCGTTTGCTCATGTCTCTCCTCCCATATTACAATTAAAGAGGTGTGACATAGAAGAAGAGCGAAATGGAGATTATTTTGGAATCCAGATAAAGATATGCAATGGAAAGCTAATACAAGTAGTTGCATCAGAGAAAGGGTTCTATACAGTGGGAAAGCAGTCTATGCAAAGTCACTCTCTGGTGGACCTTTTGCAGCAGCTCAGCAGAGCTTTTGCCACTGCCTATGAATCATTGATGAAAGCTTATCTTGAACACAACAAGTTCGGTAATCTTCCATATGGGTTCCGAATGAATACATGGGTTGTCCCTCCATCAGTGGTCGAGTCTCCAACAGACTTCCCGTCCTTGCCAACCGAAGATGAAAACTGGGGTGGCAATGGTGGTGGTCATGGAAGAAATGTTGAACCTGATTGTCGACCATGGGCAGCAGAATTTGCCTTGCTGGCTAAGCTTCCATGCAAGACTGAGGAGGAAAGGTTGATTCGAGATCGGAAAGCTTTTCTACTTCATAGTCAATTTGTTGATATCTCCGTCTTTAAAGCAGTTGCTGCCATTCGCCATGCCATATCTTCCAATTCAAATGAACAGGAGCCGACAAGTTATGCTCCAGGATCAATCCTACTAGAGGAACGTGTTGGAGACTTGTCCATTTTATTGACACGTGATTCAACAGATGCAAGCTCAAAATCTGCTGTCAAACTAAATGGCTATCAATCATCTCATAAATTTAATGAAGAAGTGGCTCAGAAGAATTTACTCAAGGGGTTAACTGCAGATGAGAGTGTCGTAGTTCATGATACTTCCTCCTTGGGGCTTGTGATTGTAAGACATTGTGGATACACTGCAACAGTAAAGGTTGTTGGTAACACAAAGAAGGCGAAGAATGAGGTCAAAGACATTGTAATTGATGATCAACCAGATGGAGGGGCAAATGCTCTTAATCTCAACAGCTTGAGGACTGTGCTAGAAAATTCCAGCTCTGAACTATCAGAAAGATTTCAGGGATCTCAATGTTCATTAGGTGATTTAGAAATGTCTAAAGATGTGGTTCGAAAAGTAATTAAAGAAAGTTTGACAAAGCTAAAAGAGAAGCCAGGGGTTGTGAGAAAGTTAATCCGATGGGAACTTGGTTCTTGTTGGCTGCAGCATCTTCAAAAGCGAGATCAGAAAGATTCAAAATCCAAAAATACAGAGATGACAGAGAATGAACCAGCTGTTAAAGGTCTTGGAAAGCAGTTCAAGTTTTTGAAGAAAAGGGAAAAGAAGTTAAACAATGGTGAGGAAGAAAGTATTTCTTGCCATGACAGCCTGAGTGTGCAAACTGAAGAGCTGAACAATGGTGAGTACAGCAAGGAGGGGCTGGAGAAACTCATATCTGAGGAAGCATATTTGCGACTTAAAGAGACTGGAACTGGCCTTCATCTAAAGTCTGCAGAGGAGCTTGTACTTATGGCCCACAAGTATTATGACGAAGTTGCTTTGCCGAAGCTGGTAACAGATTTTGGATCACTCGAGCTATCACCTGTTGATGGTCGCACACTGACAGACTTCATGCATTTGAGAGGACTACAGATGCATTCCTTGGGTCGAGTGGTTGAACTTGCCGAGAAGCTTCCTCATATACAATCACTTTGCATTCATGAGATGGTTACTCGAGCTTTCAAGCACGTTCTAAAAGCAGTTGTTGCCTCCGTTGGATTGGAATTGATTCCGAGAGATTATGACATGGGATACCCAAATCCCTTTAGAAGAAGTGATGTGATAAGCATGGTTCCAGTTTGTAAGCACGTTGCATGCACTTCAGCCGATGGGCGAAATTTATTGGAATCTTCCAAAATTTCTCTTGATAATGGAAAACTTGAGGATGCCGTGAACTTTGGAACAAAGGCACTCACAAAAATGATAGCTGTATGCGGTCCGTATCATCGAACTACTGCAAGCGCTTATAGTTTGTTAGCTGTAGTTCTTTACCACACAGGAGATTTTAATCAGGCAACCATATATCAGCAGAAGGCTTTAGATATTAATGAAAGGGAACTTGGGCTTGACCATCCAGACACTGTGAAAAGCTATGGAGATCTTTCTGTTTTTTACTATCGTCTCCAGCAAATTGAATTGGCATTGAAGTATGTGAATCGTGCTTTGTTCCTTCTCCATTTTACATGCGGACTTTCTCACCCAAATACAGCCGCGACGTACATAAATGTCGCTATGATGGAAGAGGGAGTAGGAAATGTCCACGTGGCTCTAAGATATCTACATGAAGCTCTCAAGTGTAACCAGAAATTATTAGGATCAGATCATATACAGACTGCTGCAAGTTATCATGCCATTGCCATAGCTCTTTCCTTGATGGAAGCTTATTCTCTAAGTGTGCAACATGAGCAAACAACGCTTAAAATACTTCAAGCCAAGCTTGGAGCGGAGGATCTTCGCACTCAGCAGGATGCTGCTGCGTGGCTGGAATATTTTGAGTCAAAATCTCACGAGCAGCAAGAAGTTGCACGGAATGGAACACCAAAGCCCGATTCCTTAATTTCAAGTAAAGGTCACCTTAGCGTATCTGATCTCCTGGATTTTATAAATCCCGATCAAGATTCTAAAGGAAGCGACTCACAGAGGAAGCTGCGTCGGGCAAAGGCTATACCTGTGAGTGATATAACTGATCAAGAACATTATGACATTACTGCTGATGGTGCATTGAGCAGCTACAGACAGGAGATGATTGCTCCCGTTCAAAAGTCAACATCAAAGATTACTCCGAAAAATTTATCGCCATCCGTGCAGTCAAAGGCTCATTATTTTAGTGCTGGAGAGGATGTGGTCAAGCTTCAGGCAAAACCTTCTGTTTCCAAATCTCAGTCTGCTTCCATAGCTGCTTCTCCAATGGCTTCGAGATCTTTATCGTATAAAGAAGTAGCTTTGGCACCACCAGGTACTGTTCTTCGGCCATTGATGGATAAAGCAGATAAGTTAGCAGACGAAACAATCAAACCTCAGAATAGTAATACTTCTTCCGAGACGGAGAATGAACAAATCGATGTTGGCTCTGCTAAATCAGTAATTGATGATGATGAAAAGGATGCAATTAATGGAAAGCAAGAAAGTGATGAAGGTGTGGCTCAATCAGAAAATAAAGACCCAAAGTGTGATGAAATACCCAGTTCATCTTCCATGAATAACTCTGCAGATTCAAATGTTAGCAAGCTATCAGCTGCAGCCGAACCATTCAATCCAGGAGCTATTTCTCTAAATCTGCAGTTAAATTCAGCTCCAGTCGCCAGTGTTTATGATGTTAGAGCTAGTCAAGGCACTCTTTCAGAGCCAATTCTCCCTCCAGCTACTACCAGAGTTCCTTGTGGGCCAAGATCTCCTCTATACTACAAGAATAATAGTTCTTTCCGCATGAAACACGGATTTTTGAAATACCAAATCCCCTTCGCAGAAAGAAGCCGTACTATGCCGACAAGAATGATGAATCCACATGCTCCTGAATTCGTTCCTCGTAGAGCTTTGCAAACAGATCCAAAAGACCCTGATTCAAAAGTTTCCAGTGGCTCGAATTCGTCAGCCGAAGCAAGTGGAGCAGAGGAGGAGAAACTGGAAGAAAAATCAAAGAATACCAGTAGTTCAAAAAGAAGCTTCTCTGAGATTGAAAAGAAGGAGCTTGCAAGGCAAATACTTCTGAGCTTCATCATGAAGTCAGTCAAGAACAATATAGATTCCGGTAGTGAGGTTGTAGGTGAGAAGAAGAATTTAGAGCATTCTGAGAATCCTTCTGCGGATGCAATAGCAAACGACAGTGCCATAATAAAAATCTTTTATGGGAATGGGGCACAACCCGACTCGGTTCCATCAGATGTAAATAAAAAGAAAAATGGAGATGGAGAAGGATTTATAGTCGTCAAAAAGCGAAGGAACCGACAACAGATCACAAGCGGAGTGGCCGGGTTGTACAATCAACCGTCTATCTGCACATCTGTTCGTTGA 4581 43.05 MAPRSGRGKTSKAKAEKKKKEEKAVVPSVVDITVVTPFQTQLVLKGISTDKILDVRRLLAENIATCHLTNYSLSHEVKGQRLNDMVEVTSLKPCLLKMVEEDYKEEAQAVAQVRRLLDIVACTTRFSKPRRSPATESRAKKNGKTHQQANSSSGPPTPSDGVGESFSSEAAVSVVSDNFGMTAIHPTPKLSEFFEFFSFAHVSPPILQLKRCDIEEERNGDYFGIQIKICNGKLIQVVASEKGFYTVGKQSMQSHSLVDLLQQLSRAFATAYESLMKAYLEHNKFGNLPYGFRMNTWVVPPSVVESPTDFPSLPTEDENWGGNGGGHGRNVEPDCRPWAAEFALLAKLPCKTEEERLIRDRKAFLLHSQFVDISVFKAVAAIRHAISSNSNEQEPTSYAPGSILLEERVGDLSILLTRDSTDASSKSAVKLNGYQSSHKFNEEVAQKNLLKGLTADESVVVHDTSSLGLVIVRHCGYTATVKVVGNTKKAKNEVKDIVIDDQPDGGANALNLNSLRTVLENSSSELSERFQGSQCSLGDLEMSKDVVRKVIKESLTKLKEKPGVVRKLIRWELGSCWLQHLQKRDQKDSKSKNTEMTENEPAVKGLGKQFKFLKKREKKLNNGEEESISCHDSLSVQTEELNNGEYSKEGLEKLISEEAYLRLKETGTGLHLKSAEELVLMAHKYYDEVALPKLVTDFGSLELSPVDGRTLTDFMHLRGLQMHSLGRVVELAEKLPHIQSLCIHEMVTRAFKHVLKAVVASVGLELIPRDYDMGYPNPFRRSDVISMVPVCKHVACTSADGRNLLESSKISLDNGKLEDAVNFGTKALTKMIAVCGPYHRTTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTVKSYGDLSVFYYRLQQIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGVGNVHVALRYLHEALKCNQKLLGSDHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLKILQAKLGAEDLRTQQDAAAWLEYFESKSHEQQEVARNGTPKPDSLISSKGHLSVSDLLDFINPDQDSKGSDSQRKLRRAKAIPVSDITDQEHYDITADGALSSYRQEMIAPVQKSTSKITPKNLSPSVQSKAHYFSAGEDVVKLQAKPSVSKSQSASIAASPMASRSLSYKEVALAPPGTVLRPLMDKADKLADETIKPQNSNTSSETENEQIDVGSAKSVIDDDEKDAINGKQESDEGVAQSENKDPKCDEIPSSSSMNNSADSNVSKLSAAAEPFNPGAISLNLQLNSAPVASVYDVRASQGTLSEPILPPATTRVPCGPRSPLYYKNNSSFRMKHGFLKYQIPFAERSRTMPTRMMNPHAPEFVPRRALQTDPKDPDSKVSSGSNSSAEASGAEEEKLEEKSKNTSSSKRSFSEIEKKELARQILLSFIMKSVKNNIDSGSEVVGEKKNLEHSENPSADAIANDSAIIKIFYGNGAQPDSVPSDVNKKKNGDGEGFIVVKKRRNRQQITSGVAGLYNQPSICTSVR 1526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4509769 4518369 + Bma013391.1 Bma15g00417 96539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00417 1526 CDD CLU-central 705 768 IPR033646 -
Bma15g00417 1526 ProSiteProfiles TPR repeat profile. 843 876 IPR019734 GO:0005515
Bma15g00417 1526 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 762 - -
Bma15g00417 1526 MobiDBLite consensus disorder prediction 144 165 - -
Bma15g00417 1526 MobiDBLite consensus disorder prediction 1 20 - -
Bma15g00417 1526 MobiDBLite consensus disorder prediction 1375 1391 - -
Bma15g00417 1526 Pfam Translation initiation factor eIF3 subunit 135 703 764 IPR033646 -
Bma15g00417 1526 SMART tpr_5 927 960 IPR019734 GO:0005515
Bma15g00417 1526 SMART tpr_5 843 876 IPR019734 GO:0005515
Bma15g00417 1526 SMART tpr_5 885 918 IPR019734 GO:0005515
Bma15g00417 1526 Pfam Mitochondrial function, CLU-N-term 49 120 IPR028275 -
Bma15g00417 1526 MobiDBLite consensus disorder prediction 1193 1212 - -
Bma15g00417 1526 Pfam Tetratricopeptide repeat 926 1000 - -
Bma15g00417 1526 Pfam Tetratricopeptide repeat 842 912 - -
Bma15g00417 1526 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1109 1523 IPR027523 GO:0006996
Bma15g00417 1526 MobiDBLite consensus disorder prediction 1193 1264 - -
Bma15g00417 1526 Gene3D Tetratricopeptide repeat domain 801 1040 IPR011990 GO:0005515
Bma15g00417 1526 ProSiteProfiles Clueless (Clu) domain profile. 316 592 IPR025697 -
Bma15g00417 1526 MobiDBLite consensus disorder prediction 1352 1414 - -
Bma15g00417 1526 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 762 1096 - -
Bma15g00417 1526 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1109 1523 - -
Bma15g00417 1526 MobiDBLite consensus disorder prediction 128 165 - -
Bma15g00417 1526 MobiDBLite consensus disorder prediction 1392 1414 - -
Bma15g00417 1526 MobiDBLite consensus disorder prediction 1215 1248 - -
Bma15g00417 1526 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 762 1096 IPR027523 GO:0006996
Bma15g00417 1526 SUPERFAMILY TPR-like 811 941 IPR011990 GO:0005515
Bma15g00417 1526 MobiDBLite consensus disorder prediction 1249 1264 - -
Bma15g00417 1526 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 762 IPR027523 GO:0006996
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma13g00716 Bma15g00417 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00727 Bma-Chr7:18826818 Bma15g00417 Bma-Chr15:4509769 8.72E-171 dispersed
Bma13g00142 Bma-Chr13:1498695 Bma15g00417 Bma-Chr15:4509769 2.93E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00417 K03255 - qsu:112041004 1146.72