Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00425 ATGGCGCTTCACTGCCTGGCGAGAAAGCTACGTGAAGCGCATCCGTGTTGCCTGATCCTGCTATTCGACCACCATTCCTTCTCTTTCAATCGCTCGCCTTCTTCTTCTTCCTTTCGGCTTCCTCATTTCTCTCAGGCATTTCATCGATCATCTCTTCTGCCTTCACGTTTCTCGATCCTCCGACCATTCTCCGCCCGTTATGTAACTGATCCAGTTGATTCTGATGGTGGAAGATTGCAAGTTTCTGACCAAGAAATATCGGCTCTTCCGCTGTTTTTGGAAGTGATCAACCGGGCTGTTCGTTCTCCTTCTGAGGCACAGGCCATTGACGCTTTGAACGACTCTGGGATTGAAGCAAACAAGAATTTAGTGTATTCAGCGATCTGGGCATTGAGGGAAGAGTGGAAATCGTCGGAAGCTTTCCATGCTCTTCTGACCGCTCTCTGTAAATATGGCAACATGGAGGAGGCTGAAGAGTTTATGCTTGTAAATCAGAAACTCTTCCCGCTGAAAGTCGAGAGCTTTAACATTATTCTCAACGGTGTGTGTAATATCTCCGTCGATGTGTTTGAGGCAAAGAGAGTATGGAGAGAAATGTCAAAATACTGTATTACACCAGATTCTACTTCTTATACTCACATGATATCGTGCTTCTCCAAGGTTGGAAACCTTTTTGACTCACTTAGACTCTTTGATGAGATGAAGAAAAGGGGTCATTTTCCAGGTCTGGTTGTTTATAATTCATTAATTTATGTGCTAACTAGGGAGAATTGCTTTGCAGAAGCTCTCAAGATCTTGGAGAAAATAAAGGAATTAGGTTTACCTGTCTTTAATCATACATCTTATTGCCTTGGTATGGATACAAAGTTAGCAGTCACGACGACTACATTTCGGACAATTTTCGATGTCTTCTACCTTCTCAGAATGGGTTTCCAGTTCCGCACTGCTTTTATTGCACCGTCTTCTCGGGTATTTGGACGAGGTGAACTTGTTATAGATCCTGCCGAGATAGCCAAGCGTTACCTGCAGCGCTATTTCATTATTGATTTTCTTTCAGTCCTGCCTATACCACAGGTTGTGGTGTGGAGGTTTCTTCAAAGATCGAAAGGCTCAGAGGTGTTGAATATAGAGCTTAAAAAGACGGTTGGTGTATTTGCTGAAAGTGCTTGGGCAGGGGCTGCATACTATTTGCTGCTATATATGCTTGCTAGTCACATTGCTGGCTCATTTTGGTACTTACTAGCAGTGGAAAGAAATGAATTTTGCTGGAGAAATGCATGCATTAGTAGTGGGAGATGTAACATAAATTATTTGTACTGCGGCAACCGACACATGGAAGGTTACGTTGATTGGAAAAACATGAGCGAGAGTATTCTAAGAGGCAAGTGCTCGGCCCAAGGTGGAGGGCCATTCAATTACGGGATCTACACAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTTGCTCTTCTTATAGGCAATATGCAACAGACTTACCTTCAATCTCTCACGGTTCGTCTTGAAGAGATGAGGATCAAAAGGAGGGACTCCGAGCAGTGGATGCATCATCGGTTACTTCCGCAAGAATTGAGGGAGAGAGTTAGACGATATGATCTATACAAATGGTTGGAAACACGTGGGGTCGATGAAGAGAGCATCGTCCAAAGTCTGCCTAAAGATCTGAGGAGAGATATCAAAAGGCACCTTTGTTTGAATTTAGTCAGAAGAGTTCCCCTGTTTGCTAACATGGATGAGAGATTGTTAGATGCCATATGCGAGCGACTGAAACCGAGTTTGTATACGGAGAGTACGTACATCGTCAGGGAAGGAGACCCGGTTAATGAGATGATGTTCATTATACGTGGCCGCCTAGAAAGTGTAACAACAGATGGAGGGAGAAGTGGATTTTTCAATCGAGGGGTGCTGAAAGAAGGCGATTTCTGTGGAGAAGAGCTCCTAACATGGGCACTTGACCCCAAAGCTGGAGCCAATTTACCATCATCTACTCGAACAGTGCATGCTCTAACTGAACAATGGAGGACATGGGCTGCATGCTTTATTCAGACTGCATGGAGGCGGTATTGCAGGCGGAAAATAGCTGAACAGAGACGTAAAGAAGAGGAGGAAGAATTAGACGAAGAAGAAGAAGAAGAAGAAGACAATTATGGGAGTGGAAAAGCTTTAGTGAGGCGTAATTTTAGTTCATCAAGGCTTGCGGCAACCATTCTGGCATCCCGTTTTGCAGCAAATGCTCTGCGTGGTCATAGGCTTCGAAACCCGAGCATAAAAGGGTTGGTTAACCTGCAAAAGCCTCCGGAGCCAGACTTCTCTATCTATGAGGCAGATTAG 2511 43.57 MALHCLARKLREAHPCCLILLFDHHSFSFNRSPSSSSFRLPHFSQAFHRSSLLPSRFSILRPFSARYVTDPVDSDGGRLQVSDQEISALPLFLEVINRAVRSPSEAQAIDALNDSGIEANKNLVYSAIWALREEWKSSEAFHALLTALCKYGNMEEAEEFMLVNQKLFPLKVESFNIILNGVCNISVDVFEAKRVWREMSKYCITPDSTSYTHMISCFSKVGNLFDSLRLFDEMKKRGHFPGLVVYNSLIYVLTRENCFAEALKILEKIKELGLPVFNHTSYCLGMDTKLAVTTTTFRTIFDVFYLLRMGFQFRTAFIAPSSRVFGRGELVIDPAEIAKRYLQRYFIIDFLSVLPIPQVVVWRFLQRSKGSEVLNIELKKTVGVFAESAWAGAAYYLLLYMLASHIAGSFWYLLAVERNEFCWRNACISSGRCNINYLYCGNRHMEGYVDWKNMSESILRGKCSAQGGGPFNYGIYTKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFALLIGNMQQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPQELRERVRRYDLYKWLETRGVDEESIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKAGANLPSSTRTVHALTEQWRTWAACFIQTAWRRYCRRKIAEQRRKEEEEELDEEEEEEEDNYGSGKALVRRNFSSSRLAATILASRFAANALRGHRLRNPSIKGLVNLQKPPEPDFSIYEAD 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4604835 4617760 - Bma013399.1 Bma15g00425 96547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00425 836 ProSiteProfiles cAMP/cGMP binding motif profile. 633 715 IPR000595 -
Bma15g00425 836 MobiDBLite consensus disorder prediction 761 775 - -
Bma15g00425 836 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 542 731 - -
Bma15g00425 836 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 374 479 - -
Bma15g00425 836 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 274 374 - -
Bma15g00425 836 Pfam PPR repeat 141 160 IPR002885 -
Bma15g00425 836 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 731 833 - -
Bma15g00425 836 SUPERFAMILY Voltage-gated potassium channels 286 418 - -
Bma15g00425 836 Gene3D Jelly Rolls 631 741 IPR014710 -
Bma15g00425 836 SMART cnmp_10 633 762 IPR000595 -
Bma15g00425 836 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 542 731 - -
Bma15g00425 836 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 374 479 - -
Bma15g00425 836 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 731 833 - -
Bma15g00425 836 CDD CAP_ED 633 731 IPR000595 -
Bma15g00425 836 TIGRFAM PPR: pentatricopeptide repeat domain 210 241 IPR002885 -
Bma15g00425 836 TIGRFAM PPR: pentatricopeptide repeat domain 244 274 IPR002885 -
Bma15g00425 836 MobiDBLite consensus disorder prediction 757 778 - -
Bma15g00425 836 Gene3D Helix hairpin bin 534 624 - -
Bma15g00425 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Bma15g00425 836 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 274 374 - -
Bma15g00425 836 MobiDBLite consensus disorder prediction 474 544 - -
Bma15g00425 836 ProSiteProfiles IQ motif profile. 734 763 IPR000048 GO:0005515
Bma15g00425 836 Coils Coil 478 541 - -
Bma15g00425 836 MobiDBLite consensus disorder prediction 476 543 - -
Bma15g00425 836 Gene3D Tetratricopeptide repeat domain 136 304 IPR011990 GO:0005515
Bma15g00425 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 206 IPR002885 -
Bma15g00425 836 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Bma15g00425 836 SUPERFAMILY cAMP-binding domain-like 562 708 IPR018490 -
Bma15g00425 836 Pfam Pentatricopeptide repeat domain 194 252 IPR002885 -
Bma15g00425 836 Pfam Ion transport protein 246 478 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma15g00425 836 Coils Coil 750 775 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00425 Bma-Chr15:4604835 Bma11g00665 Bma-Chr11:12624647 1.13E-154 dispersed
Bma15g00425 Bma-Chr15:4604835 Bma08g00382 Bma-Chr8:8627202 5.93E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00425 K05391 - vvi:100241716 689.878