Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00428 ATGGAAGCTGCTTCTAAGAAAGCACAAACGCCTCGCCAATCATCTTACAACTCCCGCCATGTGAGCCCTCTGAGCAGTCTCAGACACTGCCGTAGCTACAGCGGAGAGGGCCGGTTGGCCTCCATTGAAACCGCTCTGGATGACATTTCAAACCGAAATAAAGAGAATGCCGAACCCAACAAGATTGAGACTGAGAGTTGTTTGTTCGTGGGAAAGGAAAACGTGTTTCCCTCCAATGGAGTTTCTGCGAAGCCCAAGACGATTTCAGATTTCAAGTCTTTCTCGACGGGAAGCGCGTTGAAGCCATCCTCCCTGCAGCTCTGCATGCAAATCAACGAGCCGGAGAAGGCTTTCGGGTCTAAGTTATTGTACACGACGGACTCAGAACACTCGGCCACACTAAAGATTTGGGACTATTCCGATTCAGAGGCGGCTCCTGCTTCGTCCTGGTCCACTTTGCCGAACAGGTCGTTGCTGTGTCGGCCATTGCCTTTGGATATCGGAAAATGTACTTGTGTTATAGTCAAGGAAGCTTTACCAGATGGCATCCATGGCGGCGCTCTCTATTCCCTTTACACCAATGAAGGACAGGGACGACAGGACCGGAAATTAGCCGTTGCTCTCCATAAACGACATAATGGGAAGTCAGGTTTCACTATAGCTCAGAACATTAAAGGGATAGCACCTAAGGCTGATGATAGTTTCATAGGATCCATTACTTCAAATCTCATGGGCTCCAAATATCATATATGGGACCAGGGGAGTCGTGCAAAATCCCCAAGCACCCAATCTAAATCACTTCTTGCTGCTGTTACATTTGTGCCAACAGTCACCACCTGGACAGGAAGCCATAGAAGCATGAGAGCTTACGTACCAAAACATCAATCAATGCAGCTAAAAAACACGACCCAAGCGCAACACATTGCTGGACTGTTAGAGGGGTGGGAAGAGCAAAAAGACAAAGCCCATCAGCTCTTTTCGAGAGTTCCTCTCTACAACAAGATTTCAAAACAATATGAGTTGGACTTCAGAGACAAAGGTAGAGCAGGACTTCAAATCCTGAGGTCAGTCAAAAACTTTCAGCTGACGATGGAGAACAATGGAAAGCAGACAATCCTGCAGCTTGGAAGAGTTGGGAAGTCAAAATACGTGATGGACTACAGATATCCTCTGACGGGTTACCAAGCATTCTGCATTTGTTTGGCTTCCATAGATTCCAAGCTTTGTTGCACAGTGTAA 1239 47.13 MEAASKKAQTPRQSSYNSRHVSPLSSLRHCRSYSGEGRLASIETALDDISNRNKENAEPNKIETESCLFVGKENVFPSNGVSAKPKTISDFKSFSTGSALKPSSLQLCMQINEPEKAFGSKLLYTTDSEHSATLKIWDYSDSEAAPASSWSTLPNRSLLCRPLPLDIGKCTCVIVKEALPDGIHGGALYSLYTNEGQGRQDRKLAVALHKRHNGKSGFTIAQNIKGIAPKADDSFIGSITSNLMGSKYHIWDQGSRAKSPSTQSKSLLAAVTFVPTVTTWTGSHRSMRAYVPKHQSMQLKNTTQAQHIAGLLEGWEEQKDKAHQLFSRVPLYNKISKQYELDFRDKGRAGLQILRSVKNFQLTMENNGKQTILQLGRVGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCTV 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4645045 4646925 + Bma030799 Bma15g00428 96550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00428 412 PANTHER TUBBY-RELATED 4 410 - -
Bma15g00428 412 PANTHER TUBBY-LIKE PROTEIN 8 4 410 - -
Bma15g00428 412 Pfam Tub family 160 406 IPR000007 -
Bma15g00428 412 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Bma15g00428 412 PRINTS Tubby superfamily signature 235 259 IPR000007 -
Bma15g00428 412 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Bma15g00428 412 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Bma15g00428 412 SUPERFAMILY Tubby C-terminal domain-like 147 411 IPR025659 -
Bma15g00428 412 MobiDBLite consensus disorder prediction 7 27 - -
Bma15g00428 412 MobiDBLite consensus disorder prediction 1 27 - -
Bma15g00428 412 Gene3D Tubby Protein; Chain A 152 411 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00428 Bma-Chr15:4645045 Bma01g02507 Bma-Chr1:82764747 1.25E-14 dispersed
Bma15g00428 Bma-Chr15:4645045 Bma04g01098 Bma-Chr4:24956520 1.86E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58480 PF01167 Tub 1.40E-42 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00428 K19600 - csv:101216780 567.0