Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00429 ATGGGGAAGATTTCGCAGCAGAATCAGAACAGCTCCGTCACTGTTAACAGTAGTAACAAGGAGAAGGTGAAGAAGAGGACTCGTAAAAGTGTTCCTCGCGATGCTCCTCTGCAGCGGAGCTCCGTCTATCGCGGAGTTACCAGACATCGATGGACGGGGAGATACGAGGCTCATCTGTGGGATAAGAACTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGAGCCTACGACGATGAAGAAGCAGCAGCTCATGCGTATGATTTGGCAGCTTTAAAGTACTGGGGACAGGAAACCATTCTTAATTTTCCACTAGAAACGTACGAGGAGGAGGTCAACCAAATGGAAGGCCAATCCAAAGAAGAATATATCGGATCATTGAGAAGGAAAAGTAGTGGGTTCTCTCGAGGAGTCTCGAAATATAGAGGCGTAGCAAGACATCATCACAACGGTAGATGGGAAGCCCGGATTGGTCGAGTATTTGGCAATAAGTATCTCTACCTTGGAACTTATGCTACCCAAGAAGAAGCTGCAACGGCTTACGATATGGCAGCGATAGAGTATCGCGGTCTTAACGCCGTTACGAACTTTGACCTCAGCCGTTATATTAAATGGCTTCGTCCGAATGCTGACGGGCAAAGCGACAACGCTAACGGGGCTATTAAATCTAACGATGATAGCCAGCCTGACGCGGGGACCGGCAATGACCCGGTTCCTAGCCCTACCTTTCAGCTCGGGTTCACCTTTCTACCTCAGGATCAGCAGTGCTCACCGCCGCGATCAGGCGTGGCCGCCTCTGCATCGTCAGCGTTAGGTCTTCTATTGCAGTCGTCGAAGTTTAAAGAGATGATGGAGAGAACGTCGGCCGTTGAGTGTCCACGGATTCGGACGGAATCGACGGATCCGCCGCGAAGCAGCTTTCCCGACGATATTCAGACGTATTTTGACTGCCAAGACTCCAGCAACTACACAGACGGAGACGATAGTATATTTGCTGATCTGAATTCCTTCGCATCGCCGATCTTTCATTGCGAGCTCGATGGTTAG 1050 49.9 MGKISQQNQNSSVTVNSSNKEKVKKRTRKSVPRDAPLQRSSVYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPLETYEEEVNQMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLRPNADGQSDNANGAIKSNDDSQPDAGTGNDPVPSPTFQLGFTFLPQDQQCSPPRSGVAASASSALGLLLQSSKFKEMMERTSAVECPRIRTESTDPPRSSFPDDIQTYFDCQDSSNYTDGDDSIFADLNSFASPIFHCELDG 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4647271 4649658 - Bma013402.1 Bma15g00429 96551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00429 349 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 335 - -
Bma15g00429 349 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 335 - -
Bma15g00429 349 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677
Bma15g00429 349 SMART rav1_2 42 111 IPR001471 GO:0003700|GO:0006355
Bma15g00429 349 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Bma15g00429 349 Pfam AP2 domain 140 191 IPR001471 GO:0003700|GO:0006355
Bma15g00429 349 Pfam AP2 domain 41 97 IPR001471 GO:0003700|GO:0006355
Bma15g00429 349 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Bma15g00429 349 Gene3D AP2/ERF domain 42 107 IPR036955 GO:0003700|GO:0006355
Bma15g00429 349 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700|GO:0006355
Bma15g00429 349 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Bma15g00429 349 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Bma15g00429 349 ProSiteProfiles AP2/ERF domain profile. 42 105 IPR001471 GO:0003700|GO:0006355
Bma15g00429 349 MobiDBLite consensus disorder prediction 1 18 - -
Bma15g00429 349 MobiDBLite consensus disorder prediction 1 41 - -
Bma15g00429 349 MobiDBLite consensus disorder prediction 214 239 - -
Bma15g00429 349 CDD AP2 140 201 IPR001471 GO:0003700|GO:0006355
Bma15g00429 349 SUPERFAMILY DNA-binding domain 41 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00408 Bma-Chr2:6248953 Bma15g00429 Bma-Chr15:4647271 2.76E-90 dispersed
Bma14g01196 Bma-Chr14:17721162 Bma15g00429 Bma-Chr15:4647271 2.12E-06 dispersed
Bma15g00429 Bma-Chr15:4647271 Bma07g00696 Bma-Chr7:14932798 2.66E-06 dispersed
Bma15g00429 Bma-Chr15:4647271 Bma07g01409 Bma-Chr7:49858960 3.83E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58481 PF00847 AP2 1.70E-09 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00429 K09285 - pop:18097139 481.1