Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00444 ATGGAGCTGGGCTTGAGCTTGGGAGATGCAACGAAGCCGTTCGCCTTCGCTGAAAAACCACGACATCGAAGGGTTTCCGCAAAAGATTTTGGCTTTTGCATGGGTTTATCGATTGGATCGGCACCTGTGACTGGAGAGAAAGAAACTGGAGAAGAGGAAGAGGAAGAGGAAGAAGAAGAATATGAAAATGGCGAAGATAATCAATTATGTAGAGAAGAGGAGGATTCTCTTCCAGTCTCCATTGATGGACCAGTTCAGCTCGACCTGCTTCCTCACACTCCTGTACCTCGAATTCCTCCGAGCACTGTCCAAATCTTCCATTGGCACCCACGGGAAGACGGGAGTTCGGAAGGTGGTTCTTCAACCAGGGGGCTAGACGTGAATCGAATACCCTCAACGGAGGCAGTCGACGGAGACGCATCGCCGCCGTACGATGCCGCGATTTCGCTACCGACGTATGCCGGCGGAGGAGACGGCGCAGGAAATGAAAGGGGACAGGTGGATAGAGCATCTTCCAGACCAAGCGATGACGATGAGAATGGCCCTAGCAGGAAAAAACTGAGACTTTCAAAAGAACAGTCTGCTTTCTTAGAAGAAAGTTTCAAAGAACACAACACGTTAAACCCAAAGCAAAAGCTTGCCGTTGCGAATCAGCTCAATCTCCGACCTCGCCAAGTAGAAGTGTGGTTTCAAAATCGGAGAGCCAGGACGAAACTGAGGCAAACGGAGGTGGATTGCGAATACTTAAAGAAGTGCTGCGAGACACTGACCGTGGAAAACAGACGGCTGCAGAAAGAGTTGCAAGAGCTAAGAGCGTTGAAGAGCAACAACTCACTGTACATGCAATCACCAGCGACGACTCTAAATATGTGCCCCTCTTGCGAACGGGTAGCCACTTCTACCGCCGCCGCCGTCTCCACCGCCGGAGCTTCAAAGACGTGCACCGAACCTACAATAAAGGCGTCATCTGGGCTATCTTTTAGCAAATCCAGGTCGTATCCTTTTGGTCCGCACCAATCCCCGTCTTCCAATTAG 1035 50.72 MELGLSLGDATKPFAFAEKPRHRRVSAKDFGFCMGLSIGSAPVTGEKETGEEEEEEEEEEYENGEDNQLCREEEDSLPVSIDGPVQLDLLPHTPVPRIPPSTVQIFHWHPREDGSSEGGSSTRGLDVNRIPSTEAVDGDASPPYDAAISLPTYAGGGDGAGNERGQVDRASSRPSDDDENGPSRKKLRLSKEQSAFLEESFKEHNTLNPKQKLAVANQLNLRPRQVEVWFQNRRARTKLRQTEVDCEYLKKCCETLTVENRRLQKELQELRALKSNNSLYMQSPATTLNMCPSCERVATSTAAAVSTAGASKTCTEPTIKASSGLSFSKSRSYPFGPHQSPSSN 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4823091 4824348 + Bma013418.1 Bma15g00444 96566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00444 344 MobiDBLite consensus disorder prediction 48 69 - -
Bma15g00444 344 Pfam Homeobox associated leucine zipper 240 274 IPR003106 GO:0006355|GO:0043565
Bma15g00444 344 PANTHER PROTEIN, PUTATIVE-RELATED 77 336 - -
Bma15g00444 344 ProSiteProfiles 'Homeobox' domain profile. 180 240 IPR001356 GO:0003677
Bma15g00444 344 SMART halz 240 283 IPR003106 GO:0006355|GO:0043565
Bma15g00444 344 Pfam Homeodomain 184 238 IPR001356 GO:0003677
Bma15g00444 344 Gene3D - 176 245 - -
Bma15g00444 344 ProSitePatterns 'Homeobox' domain signature. 215 238 IPR017970 GO:0000981|GO:0006355
Bma15g00444 344 MobiDBLite consensus disorder prediction 169 189 - -
Bma15g00444 344 CDD homeodomain 184 241 IPR001356 GO:0003677
Bma15g00444 344 Coils Coil 253 276 - -
Bma15g00444 344 MobiDBLite consensus disorder prediction 308 344 - -
Bma15g00444 344 Coils Coil 47 67 - -
Bma15g00444 344 SMART HOX_1 182 244 IPR001356 GO:0003677
Bma15g00444 344 MobiDBLite consensus disorder prediction 132 189 - -
Bma15g00444 344 MobiDBLite consensus disorder prediction 37 75 - -
Bma15g00444 344 SUPERFAMILY Homeodomain-like 173 241 IPR009057 -
Bma15g00444 344 PANTHER - 77 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00657 Bma-Chr12:27787469 Bma15g00444 Bma-Chr15:4823091 3.90E-71 dispersed
Bma15g00444 Bma-Chr15:4823091 Bma15g01097 Bma-Chr15:43737466 3.41E-57 dispersed
Bma10g00168 Bma-Chr10:1446294 Bma15g00444 Bma-Chr15:4823091 5.94E-81 transposed
Bma15g00444 Bma-Chr15:4823091 Bma09g00866 Bma-Chr9:47779827 8.20E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58482 PF00046 Homeodomain 1.10E-14 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00444 K09338 - nnu:104603567 336.65