Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00493 GTCTACTCCACGGAACCGATCATTTATCTACTCTTCCCTCATTTTGCAGTTCTTACCAAGGATTTTTTATCCCATTTCGCTAATGCAAACGGTGAAGCTAAATACATGAATATCCTGCAAGAGGTTGCGAACCGGAAGGTCCGTGCAGTGTATATTGATCTCGAAGATCTTTTCAATTATAAAGATTTAGATGAGGAATTTCTCCAACGAATTACCGAGAACACACGAAGGTATATTGGAATTTTTGCAGAAGTCATTGATGAGCTAATGCCTGAGCCAACAGAGGCATTTGCAGACGATGATCACGACATATTAATGACCCAAAGGTCTGACGATGGACCTGATAATGTGGACGGATCAGATCCATTTCAAAAAATGCCTCCAGAAATCAAGCGCTACTTTGAAGTTTACATTAGAGCATCTTCAAAGGGTCGCCCTTTCACTATTAGGGAGGTCAGGGCTTCACATATTGGCCAGCTTGTAAGGATATCTGGAATAGTGACACGATGCTCTGATGTTAAGCCACTAATGAGAGTAGCTGTGTACACATGCGAGAATTGTGGTTTTGAGATTTACCAGGAAGTAACAGCCCGAGTTTTCATGCCCCTCTTTGTGTGTCCATCAAGGCGATGTATAACAAATAAATCGAAAGGAAATCTTATCCTCCAACTAAGAGCATCAAAATTTTTGAAGTTTCAGGAGGCCAAAATTCAGGAGTTATCTGAACATGTTCCTAAAGGTCATATTCCTCGAACAATGACCGTTCATTTTAGGGGTGAGCTCACGAGGAAGGTTGCTCCAGGTGATGTTGTTGAGTTATCTGGTATTTTTCTCCCTATACCTTACACTGGCTTTAGGGCAATGCGCGCCGGTCTGGTTGCTGATACTTACTTGGAAGCAATGTCTATCAACCATTTCAAGAAAAAATACGAGGAATATGAACTCAAAGGAGACGAGGCTGATCTAATTGCAAACTTGGGAGAGAGTGGTGATATATATAACAAGTTGGCACGTTCTTTGGCCCCTGAAATTTTTGGGCATGAAGACATCAAAAAAGCTTTGCTTCTTCTTCTCGTTGGTGCCCCTCACAGAAAGTTGAAAGATGGAATGAAGATTAGAGGAGACTTACATATATGTTTGATGGGTGATCCTGGTGTGGCAAAGAGTCAACTTCTTAAACACATTATTAATGTTGCACCCAGGGGAGTTTACACTACTGGCAAAGGAAGTAGTGGCGTTGGTCTAACTGCCGCTGTGCAGAAAGATCCGGTGACAAATGAGATGGTCCTTGAAGGAGGGGCTTTGGTCCTAGCCGATATGGGCATTTGTGCTATTGATGAGTTTGACAAGATGGATGAATCCGATCGTACAGCGATACATGAAGTTATGGAGCAGCAGACTGTCAGTATCGCCAAGGCTGGGATCACTACATCTCTGAATGCAAGGACTGCTGTACTTGCTGCTGCCAATCCAGCATGGGGAAGATATGACCTACGGAGAACCCCAGCGGAAAATATAAATCTTCCCCCAGCCCTTTTATCACGATTTGATTTTCTATGGCTGATACTTGATCGAGCTGATATGGATAGTGATCTTGAAATGGCCAGGCATGTTGTCTATGTCCACCAGAACAAAGAATCTCCAGCTCTTGGGTTTACTCCTCTAGAACCATCTGTTCTTCGAGCATACATTTCAGCAGCAAGAAGGATATCTCCTTTCTTTCAAAGGGATTTGGAGGAGTATATTGCAAGTGCTTACTCCAGCATTCGACAAGAAGAAGCTAAATCTGACTCTCCACATTCCTATACAACTGTGAGAACTCTGCTCAGCATCCTCCGAATTTCAGCTGCACTAGCAAGACTTCGATTCTCTGAAACAGTTGCTCAGAGTGATGTGGATGAGGCACTGCGGTTAATGCAAATGTCGAAATTTTCTTTATACTCAGATGATCGCCAAAAATCTGGTCTTGACGCCATCTCAGATATCTATTCAATTCTGCGAGATGAAGCTGCAAGGACTAATAAAGTGGATTTGAGCTATGTGCATGCACTCAACTGGATTTCAAGGAAGGGATACAGCGAAGCTCAGCTGAAAGAATGTTTAGAAGAGTATGCAGCCTTAAATGTGTGGCAGATACATCCTCATAGCTTTGATATTCGATTCATTGACTCC 2172 42.77 VYSTEPIIYLLFPHFAVLTKDFLSHFANANGEAKYMNILQEVANRKVRAVYIDLEDLFNYKDLDEEFLQRITENTRRYIGIFAEVIDELMPEPTEAFADDDHDILMTQRSDDGPDNVDGSDPFQKMPPEIKRYFEVYIRASSKGRPFTIREVRASHIGQLVRISGIVTRCSDVKPLMRVAVYTCENCGFEIYQEVTARVFMPLFVCPSRRCITNKSKGNLILQLRASKFLKFQEAKIQELSEHVPKGHIPRTMTVHFRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTYLEAMSINHFKKKYEEYELKGDEADLIANLGESGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDFLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPSVLRAYISAARRISPFFQRDLEEYIASAYSSIRQEEAKSDSPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKVDLSYVHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHSFDIRFIDS 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5716328 5722315 + Bma030813 Bma15g00493 96615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00493 724 Pfam MCM P-loop domain 322 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma15g00493 724 SUPERFAMILY Nucleic acid-binding proteins 19 300 IPR012340 -
Bma15g00493 724 SMART AAA_5 374 527 IPR003593 -
Bma15g00493 724 Gene3D - 317 649 IPR027417 -
Bma15g00493 724 CDD MCM7 335 642 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma15g00493 724 Gene3D - 176 230 - -
Bma15g00493 724 Pfam MCM AAA-lid domain 559 642 IPR041562 -
Bma15g00493 724 ProSiteProfiles MCM family domain profile. 332 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma15g00493 724 Gene3D - 149 277 IPR012340 -
Bma15g00493 724 Gene3D - 16 107 - -
Bma15g00493 724 ProSitePatterns MCM family signature. 441 449 IPR018525 GO:0003677|GO:0005524|GO:0006260
Bma15g00493 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 42 702 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma15g00493 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 653 IPR027417 -
Bma15g00493 724 Pfam MCM N-terminal domain 20 138 IPR027925 -
Bma15g00493 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 42 702 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma15g00493 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 126 138 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma15g00493 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 164 175 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma15g00493 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 291 301 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma15g00493 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 182 193 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma15g00493 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 199 211 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Bma15g00493 724 Pfam MCM OB domain 149 279 IPR033762 -
Bma15g00493 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 373 388 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma15g00493 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 474 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma15g00493 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma15g00493 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 433 447 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma15g00493 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 520 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma15g00493 724 SMART mcm 145 644 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g01097 Bma15g00493 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00859 Bma-Chr7:29648638 Bma15g00493 Bma-Chr15:5716328 1.20E-113 dispersed
Bma10g01097 Bma-Chr10:32664098 Bma15g00493 Bma-Chr15:5716328 2.00E-67 dispersed
Bma15g00493 Bma-Chr15:5716328 Bma01g00291 Bma-Chr1:2423821 6.46E-89 dispersed
Bma15g00493 Bma-Chr15:5716328 Bma03g00566 Bma-Chr3:4689080 6.55E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00493 K02210 - jre:109009939 1298.11