Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma15g00493 | GTCTACTCCACGGAACCGATCATTTATCTACTCTTCCCTCATTTTGCAGTTCTTACCAAGGATTTTTTATCCCATTTCGCTAATGCAAACGGTGAAGCTAAATACATGAATATCCTGCAAGAGGTTGCGAACCGGAAGGTCCGTGCAGTGTATATTGATCTCGAAGATCTTTTCAATTATAAAGATTTAGATGAGGAATTTCTCCAACGAATTACCGAGAACACACGAAGGTATATTGGAATTTTTGCAGAAGTCATTGATGAGCTAATGCCTGAGCCAACAGAGGCATTTGCAGACGATGATCACGACATATTAATGACCCAAAGGTCTGACGATGGACCTGATAATGTGGACGGATCAGATCCATTTCAAAAAATGCCTCCAGAAATCAAGCGCTACTTTGAAGTTTACATTAGAGCATCTTCAAAGGGTCGCCCTTTCACTATTAGGGAGGTCAGGGCTTCACATATTGGCCAGCTTGTAAGGATATCTGGAATAGTGACACGATGCTCTGATGTTAAGCCACTAATGAGAGTAGCTGTGTACACATGCGAGAATTGTGGTTTTGAGATTTACCAGGAAGTAACAGCCCGAGTTTTCATGCCCCTCTTTGTGTGTCCATCAAGGCGATGTATAACAAATAAATCGAAAGGAAATCTTATCCTCCAACTAAGAGCATCAAAATTTTTGAAGTTTCAGGAGGCCAAAATTCAGGAGTTATCTGAACATGTTCCTAAAGGTCATATTCCTCGAACAATGACCGTTCATTTTAGGGGTGAGCTCACGAGGAAGGTTGCTCCAGGTGATGTTGTTGAGTTATCTGGTATTTTTCTCCCTATACCTTACACTGGCTTTAGGGCAATGCGCGCCGGTCTGGTTGCTGATACTTACTTGGAAGCAATGTCTATCAACCATTTCAAGAAAAAATACGAGGAATATGAACTCAAAGGAGACGAGGCTGATCTAATTGCAAACTTGGGAGAGAGTGGTGATATATATAACAAGTTGGCACGTTCTTTGGCCCCTGAAATTTTTGGGCATGAAGACATCAAAAAAGCTTTGCTTCTTCTTCTCGTTGGTGCCCCTCACAGAAAGTTGAAAGATGGAATGAAGATTAGAGGAGACTTACATATATGTTTGATGGGTGATCCTGGTGTGGCAAAGAGTCAACTTCTTAAACACATTATTAATGTTGCACCCAGGGGAGTTTACACTACTGGCAAAGGAAGTAGTGGCGTTGGTCTAACTGCCGCTGTGCAGAAAGATCCGGTGACAAATGAGATGGTCCTTGAAGGAGGGGCTTTGGTCCTAGCCGATATGGGCATTTGTGCTATTGATGAGTTTGACAAGATGGATGAATCCGATCGTACAGCGATACATGAAGTTATGGAGCAGCAGACTGTCAGTATCGCCAAGGCTGGGATCACTACATCTCTGAATGCAAGGACTGCTGTACTTGCTGCTGCCAATCCAGCATGGGGAAGATATGACCTACGGAGAACCCCAGCGGAAAATATAAATCTTCCCCCAGCCCTTTTATCACGATTTGATTTTCTATGGCTGATACTTGATCGAGCTGATATGGATAGTGATCTTGAAATGGCCAGGCATGTTGTCTATGTCCACCAGAACAAAGAATCTCCAGCTCTTGGGTTTACTCCTCTAGAACCATCTGTTCTTCGAGCATACATTTCAGCAGCAAGAAGGATATCTCCTTTCTTTCAAAGGGATTTGGAGGAGTATATTGCAAGTGCTTACTCCAGCATTCGACAAGAAGAAGCTAAATCTGACTCTCCACATTCCTATACAACTGTGAGAACTCTGCTCAGCATCCTCCGAATTTCAGCTGCACTAGCAAGACTTCGATTCTCTGAAACAGTTGCTCAGAGTGATGTGGATGAGGCACTGCGGTTAATGCAAATGTCGAAATTTTCTTTATACTCAGATGATCGCCAAAAATCTGGTCTTGACGCCATCTCAGATATCTATTCAATTCTGCGAGATGAAGCTGCAAGGACTAATAAAGTGGATTTGAGCTATGTGCATGCACTCAACTGGATTTCAAGGAAGGGATACAGCGAAGCTCAGCTGAAAGAATGTTTAGAAGAGTATGCAGCCTTAAATGTGTGGCAGATACATCCTCATAGCTTTGATATTCGATTCATTGACTCC | 2172 | 42.77 | VYSTEPIIYLLFPHFAVLTKDFLSHFANANGEAKYMNILQEVANRKVRAVYIDLEDLFNYKDLDEEFLQRITENTRRYIGIFAEVIDELMPEPTEAFADDDHDILMTQRSDDGPDNVDGSDPFQKMPPEIKRYFEVYIRASSKGRPFTIREVRASHIGQLVRISGIVTRCSDVKPLMRVAVYTCENCGFEIYQEVTARVFMPLFVCPSRRCITNKSKGNLILQLRASKFLKFQEAKIQELSEHVPKGHIPRTMTVHFRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTYLEAMSINHFKKKYEEYELKGDEADLIANLGESGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDFLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPSVLRAYISAARRISPFFQRDLEEYIASAYSSIRQEEAKSDSPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKVDLSYVHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHSFDIRFIDS | 724 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 5716328 | 5722315 | + | Bma030813 | Bma15g00493 | 96615 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma15g00493 | 724 | Pfam | MCM P-loop domain | 322 | 542 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma15g00493 | 724 | SUPERFAMILY | Nucleic acid-binding proteins | 19 | 300 | IPR012340 | - | |
Bma15g00493 | 724 | SMART | AAA_5 | 374 | 527 | IPR003593 | - | |
Bma15g00493 | 724 | Gene3D | - | 317 | 649 | IPR027417 | - | |
Bma15g00493 | 724 | CDD | MCM7 | 335 | 642 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Bma15g00493 | 724 | Gene3D | - | 176 | 230 | - | - | |
Bma15g00493 | 724 | Pfam | MCM AAA-lid domain | 559 | 642 | IPR041562 | - | |
Bma15g00493 | 724 | ProSiteProfiles | MCM family domain profile. | 332 | 538 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma15g00493 | 724 | Gene3D | - | 149 | 277 | IPR012340 | - | |
Bma15g00493 | 724 | Gene3D | - | 16 | 107 | - | - | |
Bma15g00493 | 724 | ProSitePatterns | MCM family signature. | 441 | 449 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
Bma15g00493 | 724 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 42 | 702 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Bma15g00493 | 724 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 342 | 653 | IPR027417 | - | |
Bma15g00493 | 724 | Pfam | MCM N-terminal domain | 20 | 138 | IPR027925 | - | |
Bma15g00493 | 724 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM7 | 42 | 702 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Bma15g00493 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 126 | 138 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Bma15g00493 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 164 | 175 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Bma15g00493 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 291 | 301 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Bma15g00493 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 182 | 193 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Bma15g00493 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 199 | 211 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Bma15g00493 | 724 | Pfam | MCM OB domain | 149 | 279 | IPR033762 | - | |
Bma15g00493 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 373 | 388 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma15g00493 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 461 | 474 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma15g00493 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 485 | 497 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma15g00493 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 433 | 447 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma15g00493 | 724 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 512 | 520 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma15g00493 | 724 | SMART | mcm | 145 | 644 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma10g01097 | Bma15g00493 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g00859 | Bma-Chr7:29648638 | Bma15g00493 | Bma-Chr15:5716328 | 1.20E-113 | dispersed | |
Bma10g01097 | Bma-Chr10:32664098 | Bma15g00493 | Bma-Chr15:5716328 | 2.00E-67 | dispersed | |
Bma15g00493 | Bma-Chr15:5716328 | Bma01g00291 | Bma-Chr1:2423821 | 6.46E-89 | dispersed | |
Bma15g00493 | Bma-Chr15:5716328 | Bma03g00566 | Bma-Chr3:4689080 | 6.55E-96 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma15g00493 | K02210 | - | jre:109009939 | 1298.11 |