Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00525 ATGGCGAAAATGGGCGTGTTTGATTCTGATCTGGCGTTGATTTTGAAGACCACTGAATTGAAGAGGGAGTTTCAGAGATTGGTTACGGCTATCATTGACGACGACGATTACAGTGCGGAGGCTGTCGATCAGGCGAAGGAGGCTTTGTGTGCTTTGGAGCGGTTGAAGCTCACAAAGAGGTCCCTATCGTGGAAGTCCGGGGAGGCTCTGTGCTGTCCCGATGAGTTTCGGTGTCCACTTTCTAAGGTCTTGATGAGGGATCCCGTCGTAGTGGCCTCCGGCCAGACTTTCGACAGACCCTTCATCCAGCAATGGTTGAAAGCAGGAAACCGGATTTGCCCTCGTACCCAACAAGTCCTGTCCCACACCATCCTTGTTCCTAATCATTTGATTCGGGAAATGATATCTCAATGGTGTATCACTCGAGGAATTGAAATGTCCGAGCCTGTTAATTATCTCACCGATGAAGGGGTGGTAACAGATTCAGATCGAGATCATTTTCTTTGTCTGCTCGAGAAAATGTCGTCAACAATATCCGATAAAAAAGCAGCGGCCAAAGAACTTCGATTGTTGACAAAGAGAATGTCCTCATTCCGGGTGCTCTTTGGGGAGTTTGAAGAAGCAATCCTATTGTTACTTACTCCACTATCTGAAGGCAGGTCTCAAGGAAATTGCAATGCCGAACTCCAAGAAGATGTTATCGCCACACTTTTAAATCTGTCAATCCATGACAACAATAAGAATATCGTTGCTCAAACCCCAACTGTATTTCCTCTACTTATCGAAGCATTGAGAACCGGAACCACAGAAACTCGGAGAAATGCTGCTGCAGCCCTCTTCACCTTGTCGGCTCTTGATTTGAACAAGGCGCTAATCGGAAAATCGGGTGCTTTGAAACCTCTTATTGAGCTTTTGGAAGAGGGTGATTCATTATCCGTGAAAGATGCCTCTTCGGCAATATTTAATGTATGTATCCTCCAAGAGAACAAGGCAAGGGCCGTAAGGGATGGAGCTATCAGGGTCATATTGAAGAAGATCACTGACCGCATGAATGTGGATGAGTTGTTGGCTATTCTGGCGATGCTTTCAACCCATCCACGGGCTGTTGAGGAAATGAAAGATCTTGGAGCTGTTTCTTGCTTGCTCGGCACTATGAGAGAGACCACTTGTGCGCGAAACAAGGAAAATTGTGTTGCAATCCTCTACGTCATCTGTTTTTATGACCGGACAAAGTGGAAGGAAATAAGGGACGAGGAAAATACATATGGAACAATCTCGGAGCTAACTCGGAATGGAACAGCGAGGGCCATGAGAAAGGCTGCCGGAATTCTCGAGAGACTGAACAGGGCTGTTAATATTACGCATAGTGCATAG 1374 46.29 MAKMGVFDSDLALILKTTELKREFQRLVTAIIDDDDYSAEAVDQAKEALCALERLKLTKRSLSWKSGEALCCPDEFRCPLSKVLMRDPVVVASGQTFDRPFIQQWLKAGNRICPRTQQVLSHTILVPNHLIREMISQWCITRGIEMSEPVNYLTDEGVVTDSDRDHFLCLLEKMSSTISDKKAAAKELRLLTKRMSSFRVLFGEFEEAILLLLTPLSEGRSQGNCNAELQEDVIATLLNLSIHDNNKNIVAQTPTVFPLLIEALRTGTTETRRNAAAALFTLSALDLNKALIGKSGALKPLIELLEEGDSLSVKDASSAIFNVCILQENKARAVRDGAIRVILKKITDRMNVDELLAILAMLSTHPRAVEEMKDLGAVSCLLGTMRETTCARNKENCVAILYVICFYDRTKWKEIRDEENTYGTISELTRNGTARAMRKAAGILERLNRAVNITHSA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6058597 6060440 + Bma013491.1 Bma15g00525 96647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00525 457 PANTHER U BOX DOMAIN-CONTAINING 7 455 - -
Bma15g00525 457 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Bma15g00525 457 SMART arm_5 243 284 IPR000225 GO:0005515
Bma15g00525 457 SMART arm_5 285 325 IPR000225 GO:0005515
Bma15g00525 457 SMART arm_5 365 406 IPR000225 GO:0005515
Bma15g00525 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 7 455 - -
Bma15g00525 457 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Bma15g00525 457 SUPERFAMILY ARM repeat 175 447 IPR016024 -
Bma15g00525 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Bma15g00525 457 Gene3D - 172 454 IPR011989 -
Bma15g00525 457 SUPERFAMILY RING/U-box 71 148 - -
Bma15g00525 457 Pfam Armadillo/beta-catenin-like repeat 288 324 IPR000225 GO:0005515
Bma15g00525 457 CDD RING-Ubox_PUB 76 118 IPR045210 -
Bma15g00525 457 Pfam U-box domain 73 140 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00122 Bma-Chr11:1154400 Bma15g00525 Bma-Chr15:6058597 8.44E-76 dispersed
Bma13g00879 Bma-Chr13:38179131 Bma15g00525 Bma-Chr15:6058597 3.23E-94 dispersed
Bma13g00880 Bma-Chr13:38208634 Bma15g00525 Bma-Chr15:6058597 1.80E-63 dispersed
Bma14g01172 Bma-Chr14:17256575 Bma15g00525 Bma-Chr15:6058597 6.44E-102 dispersed
Bma14g01592 Bma-Chr14:32906392 Bma15g00525 Bma-Chr15:6058597 4.57E-78 dispersed
Bma15g00525 Bma-Chr15:6058597 Bma14g01202 Bma-Chr14:17930075 2.08E-92 transposed
Bma15g00525 Bma-Chr15:6058597 Bma13g00342 Bma-Chr13:6178371 2.76E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00525 - - zju:107426793 645.966