Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00533 ATGACGAACCAGTACACTTGCCTAGATGGGTTTTCTCACAGTCGAAGCAGGGTGAGAGAAAGGATAAAGAAGCTACTGCATAAAGTCATCCACCATGTGAGTAATAATCTTGTTTTGCTTAAGAAAATTCCGAGAGCTGGGAAACGGAAAGTGAAGGGCGAGATATTTCCTGAGTATGGAAAGATGAAAGATGGGTTTCCGTCCTGGATTTCGGCGACAGATAGGAAATTGTTACAGTCGTCGGTAAACGAAACCACGTATGATCTGATCGTTGCTAAAGACGGGACTGGAAACTTTACCACCATTGGAGAGGCAGTGGATGCAGCTCCAAATTCGAGTACTACCAGGTTTGTTATATATATCAAGGCCGGAGCTTACTTTGAGAACGTGGAGGTAGGGAAGACGAAGACGAATTTAATGTTCATCGGAGATGGAATCGGAAAGACTGTTATCAAAGCCCACCGGAGTGTGGTTGACAACTCCACTACTTTCCGGTCGGCCACCGTCGCTGCGGTGGGTACCGGATTTATAGCGAAAGGCATAACGATCGAGAACTCCGCCGGAGCCATCAAGCACCAAGCAGTGGCCTTCAGGAGCGGCGCCGACCTATCCGCCTTTTACCTATGTAGCTTCGTTGCCTACCAAGACACGCTCTACGCTCACTCTCTCCGCCAGTTCTACCGGAACTGCGACATCTACGGCACCATTGACTTCATCTTCGGCAACGCGGCGTTTGTCTTCCAAAACTGCAGCCTCTACGCGCGGAGACCGCTTGACAACCAGCAGAACATCTTCACCGCGCAAGGCAGAGAAGATCCGAACCAGAACACGGGGACTTCAATCATCAATTGCAAGGTCGCCGCCGCCGCCGATCTGATTCCGGTGCAATCGAATTTCCAAACGTATCTTGGTCGGCCGTGGAAGGAGTACTCCAGAACTGTTTACCTGCAATCTAACCTGGGCGATTTGATCAATCCATCCGGCTGGTTGGAGTGGAACGGAACGTTCGCGCTGGACACTCTCTTCTACGGCGAGTATAAGAATCGGGGACCGGGCTCGAACACAACGGGAAGAGTGAACTGGCCTGGGTACAAGGTCATCACCAACGCAACGGAAGCTATGGCGTTTACAGTTGCTGAGTTTATCCAGGGGACGGAGTGGCTAAACTCCACCGGCATTCCTTACTTTCCATTCTTTAGTTGA 1203 50.62 MTNQYTCLDGFSHSRSRVRERIKKLLHKVIHHVSNNLVLLKKIPRAGKRKVKGEIFPEYGKMKDGFPSWISATDRKLLQSSVNETTYDLIVAKDGTGNFTTIGEAVDAAPNSSTTRFVIYIKAGAYFENVEVGKTKTNLMFIGDGIGKTVIKAHRSVVDNSTTFRSATVAAVGTGFIAKGITIENSAGAIKHQAVAFRSGADLSAFYLCSFVAYQDTLYAHSLRQFYRNCDIYGTIDFIFGNAAFVFQNCSLYARRPLDNQQNIFTAQGREDPNQNTGTSIINCKVAAAADLIPVQSNFQTYLGRPWKEYSRTVYLQSNLGDLINPSGWLEWNGTFALDTLFYGEYKNRGPGSNTTGRVNWPGYKVITNATEAMAFTVAEFIQGTEWLNSTGIPYFPFFS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6156349 6160317 - Bma013500.1 Bma15g00533 96655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00533 400 Pfam Pectinesterase 88 384 IPR000070 GO:0030599|GO:0042545
Bma15g00533 400 Gene3D - 82 397 IPR012334 -
Bma15g00533 400 PANTHER PECTINESTERASE 1 396 - -
Bma15g00533 400 ProSitePatterns Pectinesterase signature 2. 232 241 IPR033131 -
Bma15g00533 400 PANTHER PECTINESTERASE 1 396 - -
Bma15g00533 400 SUPERFAMILY Pectin lyase-like 87 396 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma09g00750 Bma15g00533 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00579 Bma-Chr7:8181006 Bma15g00533 Bma-Chr15:6156349 3.76E-130 dispersed
Bma10g00665 Bma-Chr10:9604969 Bma15g00533 Bma-Chr15:6156349 3.41E-151 dispersed
Bma14g00847 Bma-Chr14:9437581 Bma15g00533 Bma-Chr15:6156349 2.29E-120 dispersed
Bma15g00046 Bma-Chr15:641122 Bma15g00533 Bma-Chr15:6156349 9.78E-117 dispersed
Bma15g00533 Bma-Chr15:6156349 Bma10g00666 Bma-Chr10:9652008 6.44E-128 dispersed
Bma02g01157 Bma-Chr2:53565311 Bma15g00533 Bma-Chr15:6156349 1.94E-152 transposed
Bma10g01147 Bma-Chr10:39051726 Bma15g00533 Bma-Chr15:6156349 1.10E-122 transposed
Bma15g00533 Bma-Chr15:6156349 Bma09g00750 Bma-Chr9:45969162 8.15E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00533 K01051 - jre:108994228 632.869