Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma15g00564 | ATGCTTCCTTGGGGAGGTCTAACTTGCTGTTTGAGTGCAGCTGCTCTTTACCTACTCGGAAGGAGTAGCGGGAGGGATGCGCACCTGTTGAATTCTGTCCCACGAGTTAATCAATTGAAGGATCTGGCACAATTACTTGATGCCGAGAGTATATTACCTTTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTAATGCCCCGATAAACTGTGAGTTCAGTGGTTTACGAGGTGTAATTGTGGAGGAAACGGCAGAACAACATTTTCTGAAACACAATGATACCGGTTCATGGATACAAGATTCAGCCTTAATGTTGTCTATGAGTAAAGAGGTCCCCTGGTACTTGGATGATGGCACAGGTCGTGCATTTGTGGTAGGAGCTCGAAATGCCACAGGCTTTATATTGCCAATAGCGAGTGAGGTTTTTGAAGAATCTGGTCGATCTCTTGTGCGTGGAACATTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTGAAGCGAATTGAGAGGGTTTTGCCAACTGGTACTTCTTTGACTGTGGTTGGCGAGGCAGCCAAGGATGACGTTGGTACCATTCGAATTCAGCGACCCTACAAAGGGCCATTTTATGTCTCCCCAAAACCGATTGATCAACTCATTGCTAATCTTGGGAAGTGGGCAAGGTGGTACAAGTATGCGTCGATGGGTTTGACAGTGTTTGGCCTGTATCTAATTGCCAAGCATGCTATCCACTTTATCTTAGAAAGGAGGCGATGTTGGGATATGCAAAGAAGGGTTTTGGCTGCTGCTGCAAAGCGATCAAGTCAAGAAAATGAAGGTTCAACTGAAAGGGCTGACAAGGCAGCTGATGGTACTAAGAGAGACCAGTTGATGCCAGATCTTTGCGTGATATGCCTTGAGCAAAATTATAATGCTGTTTTCGTCCCGTGTGGACACATGTGCTGCTGTACGACATGCTCCTCCCACCTGACCAATTGTCCCCTTTGCAGACGAAGAATTGAACAGGTAGTGAAAACGTTCCGCCATTGA | 1029 | 45.87 | MLPWGGLTCCLSAAALYLLGRSSGRDAHLLNSVPRVNQLKDLAQLLDAESILPLVVAISGRVSSNAPINCEFSGLRGVIVEETAEQHFLKHNDTGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARNATGFILPIASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDVGTIRIQRPYKGPFYVSPKPIDQLIANLGKWARWYKYASMGLTVFGLYLIAKHAIHFILERRRCWDMQRRVLAAAAKRSSQENEGSTERADKAADGTKRDQLMPDLCVICLEQNYNAVFVPCGHMCCCTTCSSHLTNCPLCRRRIEQVVKTFRH | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 6526990 | 6531260 | - | Bma013533.1 | Bma15g00564 | 96686 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma15g00564 | 342 | CDD | RING-HC_LRSAM1 | 294 | 333 | - | - | |
Bma15g00564 | 342 | SUPERFAMILY | RING/U-box | 289 | 336 | - | - | |
Bma15g00564 | 342 | Pfam | E3 Ubiquitin ligase | 86 | 235 | IPR022170 | GO:0004842|GO:0006996|GO:0016567 | |
Bma15g00564 | 342 | PANTHER | - | 1 | 309 | IPR044231 | GO:0004842|GO:0016567 | |
Bma15g00564 | 342 | Pfam | Zinc finger, C3HC4 type (RING finger) | 293 | 336 | - | - | |
Bma15g00564 | 342 | ProSiteProfiles | Zinc finger RING-type profile. | 295 | 330 | IPR001841 | - | |
Bma15g00564 | 342 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 262 | 341 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00715 | Bma-Chr4:7300749 | Bma15g00564 | Bma-Chr15:6526990 | 1.61E-06 | dispersed | |
Bma07g00066 | Bma-Chr7:1489628 | Bma15g00564 | Bma-Chr15:6526990 | 3.30E-08 | dispersed | |
Bma15g00564 | Bma-Chr15:6526990 | Bma09g00829 | Bma-Chr9:47183344 | 3.38E-06 | dispersed | |
Bma15g00564 | Bma-Chr15:6526990 | Bma03g00366 | Bma-Chr3:2731916 | 1.80E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma15g00564 | K15688 | - | csv:101218196 | 612.838 |