Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00564 ATGCTTCCTTGGGGAGGTCTAACTTGCTGTTTGAGTGCAGCTGCTCTTTACCTACTCGGAAGGAGTAGCGGGAGGGATGCGCACCTGTTGAATTCTGTCCCACGAGTTAATCAATTGAAGGATCTGGCACAATTACTTGATGCCGAGAGTATATTACCTTTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTAATGCCCCGATAAACTGTGAGTTCAGTGGTTTACGAGGTGTAATTGTGGAGGAAACGGCAGAACAACATTTTCTGAAACACAATGATACCGGTTCATGGATACAAGATTCAGCCTTAATGTTGTCTATGAGTAAAGAGGTCCCCTGGTACTTGGATGATGGCACAGGTCGTGCATTTGTGGTAGGAGCTCGAAATGCCACAGGCTTTATATTGCCAATAGCGAGTGAGGTTTTTGAAGAATCTGGTCGATCTCTTGTGCGTGGAACATTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTGAAGCGAATTGAGAGGGTTTTGCCAACTGGTACTTCTTTGACTGTGGTTGGCGAGGCAGCCAAGGATGACGTTGGTACCATTCGAATTCAGCGACCCTACAAAGGGCCATTTTATGTCTCCCCAAAACCGATTGATCAACTCATTGCTAATCTTGGGAAGTGGGCAAGGTGGTACAAGTATGCGTCGATGGGTTTGACAGTGTTTGGCCTGTATCTAATTGCCAAGCATGCTATCCACTTTATCTTAGAAAGGAGGCGATGTTGGGATATGCAAAGAAGGGTTTTGGCTGCTGCTGCAAAGCGATCAAGTCAAGAAAATGAAGGTTCAACTGAAAGGGCTGACAAGGCAGCTGATGGTACTAAGAGAGACCAGTTGATGCCAGATCTTTGCGTGATATGCCTTGAGCAAAATTATAATGCTGTTTTCGTCCCGTGTGGACACATGTGCTGCTGTACGACATGCTCCTCCCACCTGACCAATTGTCCCCTTTGCAGACGAAGAATTGAACAGGTAGTGAAAACGTTCCGCCATTGA 1029 45.87 MLPWGGLTCCLSAAALYLLGRSSGRDAHLLNSVPRVNQLKDLAQLLDAESILPLVVAISGRVSSNAPINCEFSGLRGVIVEETAEQHFLKHNDTGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARNATGFILPIASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDVGTIRIQRPYKGPFYVSPKPIDQLIANLGKWARWYKYASMGLTVFGLYLIAKHAIHFILERRRCWDMQRRVLAAAAKRSSQENEGSTERADKAADGTKRDQLMPDLCVICLEQNYNAVFVPCGHMCCCTTCSSHLTNCPLCRRRIEQVVKTFRH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6526990 6531260 - Bma013533.1 Bma15g00564 96686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00564 342 CDD RING-HC_LRSAM1 294 333 - -
Bma15g00564 342 SUPERFAMILY RING/U-box 289 336 - -
Bma15g00564 342 Pfam E3 Ubiquitin ligase 86 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Bma15g00564 342 PANTHER - 1 309 IPR044231 GO:0004842|GO:0016567
Bma15g00564 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 336 - -
Bma15g00564 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Bma15g00564 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 341 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00715 Bma-Chr4:7300749 Bma15g00564 Bma-Chr15:6526990 1.61E-06 dispersed
Bma07g00066 Bma-Chr7:1489628 Bma15g00564 Bma-Chr15:6526990 3.30E-08 dispersed
Bma15g00564 Bma-Chr15:6526990 Bma09g00829 Bma-Chr9:47183344 3.38E-06 dispersed
Bma15g00564 Bma-Chr15:6526990 Bma03g00366 Bma-Chr3:2731916 1.80E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00564 K15688 - csv:101218196 612.838