Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00616 ATGAACAAAGCGGACAACGCATGGCAACTCACGTCGGCCACTCTCGTCGGCCTGCAAAGCGTTCCTGGCCTGGTGATTTTGTACGGCAGCATTGTTAAGAAGAAATGGGCCGTCAACTCCGCTTTCATGGCGCTCTACGCCTTCGCCGCCGTCCTCGTCTGCTGGGTCGGGTGGGCGTACCAGATGTCGTTCGGAAAGAAGTTCATCTACTTCTTGGGTCGCCCGAATATCGCGATGGACCAGAAGTTTCTACTCAGCCAAGCTTTCGCCGGGAAAATTCCGAATGCCACGATGATGTATTTCCAGTTCGTGTTTGCGGCCATCACTTTGATCTTGATCGCCGGAGCGCTGCTGGGGCGGATGAATTTCCACGCTTGGATGCTGTTTGTGCCGCTGTGGCTGACCTTCTCCTACACGATTGGGGCGTACAGCATCTGGTGTCCCGATGGGTGGCTTGCCAAGTGGGGTCTAATTGATTACTCCGGCGGCTATGTTATCCACCTCTCTTCCGGAGTTGCTGGTTTCACTGCTGCCTTCTGGGTTGGGCCCCGGCTGGGGAAGGACAGGGAGAGATTTCCGCCCAACAACATTCTTCTTATGCTCGCCGGGGCCGGCCTGCTTTGGATGGGCTGGACCGGATTCAACGGCGGCGATCCTTACGCCGCTAGCACTGATGCATCTCTAGCGGTTCTTAACACCCACGTGTGCGCTGCCACGAGCTTGCTGACGTGGCTTTTGCTTGATATGCTTTTCTTCGGGAAGCCATCTGTTATCGGTGCCACCCAGGGGATGATCACCGGCCTAGTGTGCATCACTCCGGCGGCAGGAGTGGTACAAGGATGGGCGGCGATTTTAATGGGAATGATGTCTGGATCAATCCCATGGTTCACAATGATGGTAATCCACAAGAAAATATGGATCCTCCGACAAGTGGACGACACAATGGCAGTCTTCCACACCCACGCCGTCGCCGGAAGTCTCGGCGGAATCCTCACCGGCCTCTTCGCCGAGCCCAAACTCAGCCGTCTCTTCTACTTAGTCGATGAATGGGAGCACTACATAGGTCTCTTCTACGGCTTCCACTCCGGCCAAGTCAAAGCAGGATTCAAACAAATCGGAATTCAGCTTCTGGGTATTGTCTTCGTCGTCTTTGTTAACGTTCTGACGACGAGCCTGATATGTTTAGCAGTGAAACAAATAGTTCCATTGAGGCTGACTGAAGCCGAACTGGAGATGGGGGACGAAGCCATTCATGGCGAGGAAGCATACGCGTTGTGGGGAGATGGAGAGAAGTACGAGAGTTTTAAGCACAGTGCATCATATCATATGCAAGAGTTTCCTGAAATCATACATAATAATCCTCCTTAA 1368 53.36 MNKADNAWQLTSATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWAYQMSFGKKFIYFLGRPNIAMDQKFLLSQAFAGKIPNATMMYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWLTFSYTIGAYSIWCPDGWLAKWGLIDYSGGYVIHLSSGVAGFTAAFWVGPRLGKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYAASTDASLAVLNTHVCAATSLLTWLLLDMLFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAILMGMMSGSIPWFTMMVIHKKIWILRQVDDTMAVFHTHAVAGSLGGILTGLFAEPKLSRLFYLVDEWEHYIGLFYGFHSGQVKAGFKQIGIQLLGIVFVVFVNVLTTSLICLAVKQIVPLRLTEAELEMGDEAIHGEEAYALWGDGEKYESFKHSASYHMQEFPEIIHNNPP 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7829645 7831216 - Bma013608.1 Bma15g00616 96738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00616 455 ProSitePatterns Ammonium transporters signature. 159 184 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bma15g00616 455 SUPERFAMILY Ammonium transporter 2 405 - -
Bma15g00616 455 PANTHER AMMONIUM TRANSPORTER 4 MEMBER 1-RELATED 1 448 - -
Bma15g00616 455 Gene3D Ammonium transporter AmtB like domains 1 441 IPR029020 -
Bma15g00616 455 PRINTS Rhesus blood group protein signature 102 118 IPR002229 GO:0005887
Bma15g00616 455 PRINTS Rhesus blood group protein signature 229 251 IPR002229 GO:0005887
Bma15g00616 455 PRINTS Rhesus blood group protein signature 198 216 IPR002229 GO:0005887
Bma15g00616 455 Pfam Ammonium Transporter Family 7 423 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bma15g00616 455 PANTHER AMMONIUM TRANSPORTER MEP2 1 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bma15g00616 455 TIGRFAM amt: ammonium transporter 5 423 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01463 Bma-Chr6:51298585 Bma15g00616 Bma-Chr15:7829645 0 dispersed
Bma10g00389 Bma-Chr10:3828980 Bma15g00616 Bma-Chr15:7829645 3.85E-19 dispersed
Bma14g01220 Bma-Chr14:18758158 Bma15g00616 Bma-Chr15:7829645 2.26E-22 dispersed
Bma15g00616 Bma-Chr15:7829645 Bma15g00927 Bma-Chr15:33383012 0 dispersed
Bma15g00616 Bma-Chr15:7829645 Bma02g00930 Bma-Chr2:49092498 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00616 K03320 - cit:112498327 764.607