Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00620 ATGATGTTTCCTGCTGCCATCTCCAATTCAACTTCCTTGTCTGAGGAAGCTAGCGTATCTTCTGGTACTAAAGTTCAGGACTTTGGTTGTTTTAATCCACCTCTTTCAACTATTTCTGATCCTCAACCATCTGATCAAAAGATCAAGAAAAAAAGAAGTCTACCAGGAAACCCAGACCCAGATGCTGAAGTGATTGCTTTATCTCCAAAAACCTTATTAGCTACGAATAGATTTGTGTGTGAGATTTGCAGCAAAGGGTTTCAGAGAGATCAAAATCTGCAGCTTCACAGAAGGGGCCACAATCTGCCGTGGAAACTGAAGCAGAGAAACAGCAAAGAAATTAAAAAGAAAGCTTATGTTTGCCCAGAGGCTTCTTGCGTTCATCACCATCCCTCTAGAGCTCTAGGCGATTTAACTGGGATTAAGAAACATTTCTGCAGAAAACATGGGGAGAAAAAATGGAAATGCGAGAAATGCTCAAAGATCTACGCAGTTCAATCAGATTGGAAGGCCCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATCACACACAGAGCATTCTGCGATGCTTTAGCAGAAGAAAGTGCAAGACTTTCATCAAATCAAATGGCCCTAACCGCCATTTCCACCTCCGCCGCCGTCACTACTGACGAAAAGCTCCAACCGTTCTTACCTTTCTCTTCCCACCACCATTTTCGACACCCAAACCTAAAATCTAACACTAACAGCAATCTCCTCCAAAGCCCACTTCACATCAAGACCGAAAGAGATCACCACCTTTTCCAAATCCCACCAACCACCTCTTTCTCGACAATTTCAACCGCCACCACCACCACTCCTCCATTCTTGATGCACGATCTTCCCCCACCGTTCGGCCACCCCATGCATGCAACGTCGGCCTCAGCAGCACTGTCAGCCACTGCGCTGCTCCAGAAGGCTGCCACCATTGGCGCTGCGCCAACTTCTGCACAACAGGCGCAGTGTGTGGGTCACATGGCTCACGGCCACCTCGACATTGGTGAGTTCGGGAGGGGGAGTCAGATGAACTCAGTGAGCTATATCTCACCGGAGTATCACCTTGGTGGGCTCACTTCCTCCAGCCTGACATCCACGTGGCATACGAGTGATCGTCTGACAAGGGACTTTCTCGGCCTGACAAGCGTTGACCATGGAGGTTCTGGGGGCGGAGGTGGAAATGGTGAAGATGGTGACGTTAGCATAAGCATAAAAGATATGCTAACGTATACAGGGGGTTTACAATTTGAACAGTTCGACCGCGACCAGCCAATGTTCAAGCCTCATGGGTATGGGTTCGCTGAGCCAGCCGCGTCTGAAACATGGGCGGATTGCTAG 1395 48.17 MMFPAAISNSTSLSEEASVSSGTKVQDFGCFNPPLSTISDPQPSDQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRNSKEIKKKAYVCPEASCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSSNQMALTAISTSAAVTTDEKLQPFLPFSSHHHFRHPNLKSNTNSNLLQSPLHIKTERDHHLFQIPPTTSFSTISTATTTTPPFLMHDLPPPFGHPMHATSASAALSATALLQKAATIGAAPTSAQQAQCVGHMAHGHLDIGEFGRGSQMNSVSYISPEYHLGGLTSSSLTSTWHTSDRLTRDFLGLTSVDHGGSGGGGGNGEDGDVSISIKDMLTYTGGLQFEQFDRDQPMFKPHGYGFAEPAASETWADC 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7892269 7895071 - Bma013613.1 Bma15g00620 96742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00620 464 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Bma15g00620 464 SMART c2h2final6 78 100 IPR013087 -
Bma15g00620 464 SMART c2h2final6 154 174 IPR013087 -
Bma15g00620 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 441 - -
Bma15g00620 464 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 9 441 - -
Bma15g00620 464 Gene3D Classic Zinc Finger 78 125 - -
Bma15g00620 464 Gene3D Classic Zinc Finger 147 213 - -
Bma15g00620 464 MobiDBLite consensus disorder prediction 35 61 - -
Bma15g00620 464 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Bma15g00620 464 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Bma15g00620 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00620 Bma-Chr15:7892269 Bma15g01004 Bma-Chr15:39068700 5.95E-114 dispersed
Bma15g00620 Bma-Chr15:7892269 Bma13g01231 Bma-Chr13:45549782 3.97E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58497 PF00096 zf-C2H2 0.0079 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00620 K25870 - zju:107425870 520.776