Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00648 ATGGACAATGAACTTTTTTTCAACGGACACCCACCGCCGTCCCCCATGACGTTTGAGTCAACTTCTAAAATGCCCGTTTGGCACCAGCTAGCTCCGCCGCCCGATTGCTCGCAGGAGAAATCCTTGGACTTCCTTTTCGATCCTTTCTCATCTGTCGTACCGTCGCCGGAGGCGTCCAATTCTCACGTTTCCGGCGAAGGGTTTAAGATTAGGGAGCTGATAGGGAAGCTCGGAGAATTTCCTAGTTACAACACTACTCCACTGAGCTCACCTCCGAAGCTTCATTCTCCAATAATGGCGGCGAATTCTAATGTAACGGAATTCTCAGGTGATCCTGGATTTGCAGAGAGGGCGGCGAGGTTTTCTTGCTTCGGAAGTAAGAGTTTCAATGGTCGAATCAGTCAGTTTCCTTCTTATAGACCTACTCCATCAATGGCGGACGGAAAGCTTTCTCGAGTTTCAAGCAGCCCCTCTCTCAAAGCATTTGGATCGAACTCTTCGTTGGAATCCACGGTTTCAGAGCAAATCTCAAACGAGTTAAATTGCAGGAAAAGAAAAGCGAATTCAAAGGGAAAACCGAAAGAACCCATTCAGTTTGACGAGAATTCAAATGGTAAGCGGAGCAAAGTGAGCGAAGAGAAGAGGTGTGGAAATGTCGGCGGGAAAACAGAGGAAGAAGACACTGGAAAAAGTTGCAGAAACGAAGAGAAACCAAGCAAGACGAAGAGCAACTCTAAACCTCCAGAGCCTCCAAAAGACTACATCCATGTGAGAGCCAGAAGAGGCCAAGCCACTGACAGCCATAGCCTTGCAGAAAGAGTAAGAAGAGAGAAGATAAGCGAAAGAATGAAGCTTCTTCAAGACCTCGTTCCAGGCTGCAACAAAGTCACCGGAAAATCGCTAATGCTCGACGAAATCATAAACTATGTTCAGTCATTACAGCGTCAAGTTCAGTTCCTTTCCATGAAGTTGGCTTCTGTCAACACCCGGACGGATTCCGCCATGGATTCTCTGATCTCCAAAGAAGTAAGTTTAAATTCTCGAATTGGGTATTCGAGATTTTTATGA 1068 46.44 MDNELFFNGHPPPSPMTFESTSKMPVWHQLAPPPDCSQEKSLDFLFDPFSSVVPSPEASNSHVSGEGFKIRELIGKLGEFPSYNTTPLSSPPKLHSPIMAANSNVTEFSGDPGFAERAARFSCFGSKSFNGRISQFPSYRPTPSMADGKLSRVSSSPSLKAFGSNSSLESTVSEQISNELNCRKRKANSKGKPKEPIQFDENSNGKRSKVSEEKRCGNVGGKTEEEDTGKSCRNEEKPSKTKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKSLMLDEIINYVQSLQRQVQFLSMKLASVNTRTDSAMDSLISKEVSLNSRIGYSRFL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9352134 9353460 + Bma013650.1 Bma15g00648 96770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00648 355 CDD bHLH_AtBPE_like 253 338 - -
Bma15g00648 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 330 IPR036638 GO:0046983
Bma15g00648 355 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 92 343 IPR024097 GO:0006355
Bma15g00648 355 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 33 85 IPR024097 GO:0006355
Bma15g00648 355 SMART finulus 269 319 IPR011598 GO:0046983
Bma15g00648 355 MobiDBLite consensus disorder prediction 135 254 - -
Bma15g00648 355 Gene3D - 260 336 IPR036638 GO:0046983
Bma15g00648 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 313 IPR011598 GO:0046983
Bma15g00648 355 MobiDBLite consensus disorder prediction 179 254 - -
Bma15g00648 355 MobiDBLite consensus disorder prediction 148 178 - -
Bma15g00648 355 PANTHER - 92 343 - -
Bma15g00648 355 PANTHER - 33 85 - -
Bma15g00648 355 Pfam Helix-loop-helix DNA-binding domain 267 314 IPR011598 GO:0046983
Bma15g00648 355 Coils Coil 310 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00989 Bma-Chr4:15919755 Bma15g00648 Bma-Chr15:9352134 3.02E-62 dispersed
Bma10g00270 Bma-Chr10:2454758 Bma15g00648 Bma-Chr15:9352134 3.01E-46 dispersed
Bma12g00509 Bma-Chr12:16505688 Bma15g00648 Bma-Chr15:9352134 6.18E-46 dispersed
Bma14g01254 Bma-Chr14:20440056 Bma15g00648 Bma-Chr15:9352134 3.82E-22 dispersed
Bma14g01759 Bma-Chr14:37842115 Bma15g00648 Bma-Chr15:9352134 1.44E-48 dispersed
Bma14g01772 Bma-Chr14:38098924 Bma15g00648 Bma-Chr15:9352134 1.26E-48 dispersed
Bma15g00648 Bma-Chr15:9352134 Bma09g00586 Bma-Chr9:42986767 4.33E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58501 PF00010 HLH 4.50E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00648 - - hbr:110652595 351.673