Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00649 ATGTCCCGGAAGCCTAACTATGAGTTCCAGGAATGGTGGAACGAGCAGCGAGAGAGGAATCATCAGGAGCTCCTCTCTGAGAATTCGGAAACTTCCACCGCCAGTTCCTTTCTCGCAGTCGACATTCCCGGCGGGGAATCTCCTCATGATCTTGCCATTGAGAAGGACCGGGGTAGGACACGTAGTGCGCGCCAGCTCTCATTTGTTTGTCTCCTGAAATTCCAGCAATTTGCCGCGTTTTTTACATCCATTACTGCCGGTTTCGTTTTCCTCATTCGCACTGCGAATCGTCGGATCGCGTCCCCCGATGCTCCTGCTGATTCGGCTTCCTCTCGTCTCTACCGGATTATTAAAGTGTTTTTGATTGTGGTGCTGTTGTTGTTGCTCTTCGAGCTCGTGGCTTACTTCAATGGATGGCATTTTAGTCCGCCTTCTGTTGGTTCCGCCGAGATGCTTGGACTGCTGGAATTTTTGTACGCCAATTGGCTAGACATTCGTGCGAACTACCTGGCCCCGCCGCTACAGAGCTTGACCAATGTGTGCATTGTCTTGTTCTTGATACAATCGGTGGATCGAATAGTTTTGATGGTTGGATGCTTTTGGATCAAGTCACGGAGAATGAAGCCTAAGTCGGCGATGGAATATCCTTCCAGCGACGGGAATGTGAACATCGAGGATTATCCGTTCGTCCTGGTACAGATTCCCATGTGCAATGAGAGGGAGGTTTACCAACAATCTATTGCAGCCGTTTGTATCCAGGATTGGCCAAAGGAGAAAATGCTTGTGCAGGTTTTGGATGATTCTGATGAACAAGATGTTCAACTGCTTATTAAGGGAGAAGTGCAAAAATGGCAACAAAGGGGTGTTCGGATACTGTATAGACATCGTCTCCTACGCACTGGATACAAGGCTGGAAATCTCAAATCAGCTATGGGTTGTGATTATGTAAAAGATTATGAGTTTGTCGCCATCTTTGATGCAGATTTTCAACCGGGCCCTGACTTTTTAAAGAAAACCATACCACACTTTAAGGAAAATCATGATATAGCATTGGTCCAGACAAGGTGGGCATTCGTAAACAAGGATGAGAACTTGCTCACGAGACTGCAGAACATTAATTTATCATTCCATTTCGAGGTCGAACAACAAGTCAATGGTGTGTTTCTCAACTTTTTTGGTTTCAATGGAACTGCTGGTGTGTGGAGAATCAAAGCTCTTGAGGAATGTGGTGGCTGGTTGGAAAGGACAACTGTTGAGGACATGGATATTGCAGTCCGCGCACATCTTCATGGGTGGAAGTTCATATTTTTGAATGATGTTAAGTGTCTTTGTGAACTTCCAGAGTCCTATGAGGCATACAAGAAACAGCAACATCGCTGGCATTCTGGTCCAATGCAGTTGTTTCGGTTGTGTTTCCTTGATGTAAGCAGCGCGAAAAAGGCCAACCTGATATGTCTTTTCTTCCTCCTCCGAAAGCTTATCCTCCCCTTTTATTCTTTCACACTTTTTTGCATCATTCTCCCATTGACCATGTTCCTTCCAGAAGCTCAAATACCTGCATGGGTTGTTTGCTATGTACCTGGAATCATGTCTATCTTAAATATTCTTCCAGCACCGAGATCATTTCCTTTTATAGTCCCTTACCTTCTGTTTGAGAACACCATGTCTGTAACCAAGTTCAATGCAATGATATCCGGATTGTTCCAATTTGGGAGTTCTTATGAATGGATCGTTACAAAAAAGTTGGGAAGATCATCGGAGACTGATTTAGTTGCCTTCGAAAAAGAGTTGGATCTGCGAACGGAAACTACTAGCCTTCTCCGATCATCCTCTGATTCAGGTCTTCAAGAGCTCAGTAGGATAGAGATATCTAAGAAAACTGGGAAGTCCAGAAAAAATCGTCTGTACAGAAAGGAACTTGCTCTTGCATTTATTTTGTTGACCGCATCTGTGAGAAGCCTACTGTCTGCTCAAGGAATACACTTCTACTTTCTCCTATTTCAAGGGATCACATTTTTAGTCGTTGGTCTTGATTTGATAGGGGAGCAGGTTAGTTGA 2058 44.56 MSRKPNYEFQEWWNEQRERNHQELLSENSETSTASSFLAVDIPGGESPHDLAIEKDRGRTRSARQLSFVCLLKFQQFAAFFTSITAGFVFLIRTANRRIASPDAPADSASSRLYRIIKVFLIVVLLLLLFELVAYFNGWHFSPPSVGSAEMLGLLEFLYANWLDIRANYLAPPLQSLTNVCIVLFLIQSVDRIVLMVGCFWIKSRRMKPKSAMEYPSSDGNVNIEDYPFVLVQIPMCNEREVYQQSIAAVCIQDWPKEKMLVQVLDDSDEQDVQLLIKGEVQKWQQRGVRILYRHRLLRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKENHDIALVQTRWAFVNKDENLLTRLQNINLSFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFLDVSSAKKANLICLFFLLRKLILPFYSFTLFCIILPLTMFLPEAQIPAWVVCYVPGIMSILNILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFQFGSSYEWIVTKKLGRSSETDLVAFEKELDLRTETTSLLRSSSDSGLQELSRIEISKKTGKSRKNRLYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQVS 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9401515 9406713 + Bma013651.1 Bma15g00649 96771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00649 685 SUPERFAMILY Nucleotide-diphospho-sugar transferases 227 514 IPR029044 -
Bma15g00649 685 Pfam Glycosyl transferase family group 2 322 523 IPR001173 -
Bma15g00649 685 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 26 684 - -
Bma15g00649 685 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 219 445 IPR029044 -
Bma15g00649 685 PANTHER - 26 684 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00649 - - - csv:101216681 1119.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00358 Bma-Chr4:2891941 Bma15g00649 Bma-Chr15:9401515 0 dispersed
Bma14g00424 Bma-Chr14:4982646 Bma15g00649 Bma-Chr15:9401515 4.23E-122 dispersed
Bma15g00649 Bma-Chr15:9401515 Bma09g00585 Bma-Chr9:42932507 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00530 CCT 217 396 REM Transcription Factor Family AT1G49480 62.8 1.9e-55 212.6
Bma05g00088 . 1 133 REM Transcription Factor Family AT4G33280 53.0 6.9e-40 161.8
Bma04g00358 . 1 693 REM Transcription Factor Family AT2G24630 76.8 0.0e+00 1090.1
Bma01g02238 CCT 1 708 REM Transcription Factor Family AT2G24630 65.0 1.5e-263 905.6
Bma09g00585 . 5 690 REM Transcription Factor Family AT2G24630 62.0 1.2e-244 842.8
Bma15g00649 . 5 685 REM Transcription Factor Family AT2G24630 61.5 2.1e-241 832.0
Bma01g02228 . 1 510 REM Transcription Factor Family AT2G24630 62.8 2.3e-184 642.5
Bma04g00358 . 1 693 REM Transcription Factor Family AT2G24630 76.8 0.0e+00 1090.1
Bma01g02238 CCT 1 708 REM Transcription Factor Family AT2G24630 65.0 1.5e-263 905.6
Bma09g00585 . 5 690 REM Transcription Factor Family AT2G24630 62.0 1.2e-244 842.8
Bma15g00649 . 5 685 REM Transcription Factor Family AT2G24630 61.5 2.1e-241 832.0
Bma01g02228 . 1 510 REM Transcription Factor Family AT2G24630 62.8 2.3e-184 642.5
Bma04g00358 . 1 693 REM Transcription Factor Family AT2G24630 76.8 0.0e+00 1090.1
Bma01g02238 CCT 1 708 REM Transcription Factor Family AT2G24630 65.0 1.5e-263 905.6
Bma09g00585 . 5 690 REM Transcription Factor Family AT2G24630 62.0 1.2e-244 842.8
Bma15g00649 . 5 685 REM Transcription Factor Family AT2G24630 61.5 2.1e-241 832.0
Bma01g02228 . 1 510 REM Transcription Factor Family AT2G24630 62.8 2.3e-184 642.5
Bma05g00088 . 1 133 REM Transcription Factor Family AT4G33280 53.0 6.9e-40 161.8
Bma03g00530 CCT 217 396 REM Transcription Factor Family AT1G49480 62.8 1.9e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00649 Bma_Chr15 FPKM 12.832157 13.357723 9.494291 9.467348 9.50294 9.627048 10.682981 9.908192 8.77354 9.595222