Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bma15g00775	ATGGCCGGCGGCCGCACTATCAGCGTCCTTAACGTGGCGGAGAAGCCGTCCGTGGCCAAATCCGTGTCCTCCATACTTTCCAGGAACCAAGGATTGCGAGTGCGAGAAGGCCGCTCCCGCTACAACAAGATATTCGAGTTCAACTACTCTATTCGGGGACAGCCCTGTCACATGCTCGTAACCTCCGTCACCGGTCACCTCATGGAGCTTGAATTCGAAGAGCGGTACAGGAAATGGGGCTCCTGCGATCCCGCAGATCTCTACAGCGCTCCAGTCCTAAAGTTTGTTCCCGAGGTCTCTCCCTCCACTACTGACAAGATAGATATAAAGAGGACGTTGGAGGATGAAGCTCGGCGGTGCCAGTGGCTTGTATTGTGGCTGGACTGTGATAGAGAAGGAGAGAACATTGCATTTGAAGTGATAGAAGTTTGCAGAGCAGTGAATCACCATCTCACTCTTAAGAGGGCTCGCTTCTCCGCATTGATTGATAGGTTTTTGTTTTTCTTTCTTGGTTTCTGTTATATTGTTCTTAAATATGAAAATCACCTTGAGTTGAATTCTGAAAACAAGTCCAGAGATATCCATGAAGCTGTGCAAAATCTTGTTCAACCTAATCAATGGTTTGCTGATGCTGTTGATGCTAGGCAAGAAATAGATCTTCGTATTGGTGCTTCATTTACAAGGTTTCAGACCATGCTGTTGAGAGACAGATTTGTTATTAATACTGCCACAGATGACCGGAATCTAATTTTGAGTTATGGACCTTGTCAATTTCCTACTCTTGGCTTTATTGTGGAACGTTATTGGGAGGTAGAATCACACGAGCCAGAAGAATTTTGGACCATTAACTGTTCACACAACTCAGATGAAGGTGTAGCTACTTTTAACTGGATGAGAGGACATTTGTTCGATTATACTTGTGCTGCTACAATATACGAGATGTGTGTACAGGAACCAACCGCCACTGTCTGTAATGTTAGATACCAACAAAGACTGAAACATCCTCCACATCCTCTTAATACCATTGAGCTTGAAAAGCGTGCTTCTCGATATTTCCGTATGAGCTCTGAACATACTATGAAGGTAGCAGAAGAACTATACCAAGCTGGTTTCATCAGTTATCCACGTACTGAGACTGATTGCTTTTCTCAGAGGACTGACCTACAAGCAATTGTGCAAGAGCAACAAAACCATCCTGTTTGGGGAACATATGCACGACGACTGTTGGATCCTGGAGAGGGACTTTGGAAAAATCCAAGCAATGGTGGCCACGATGATAAGGCACATCCTCCCATCCATCCAACAAAGTTTTCTCCAGGAGAAAATGGGTGGAGTCAAGATCACAATAGGCTTTACGAGCTGGTTGTTCGACATTTTCTAGCATGCGTCTCACAGCCAGCCATAGGAGCTGTGACTACTGTTGAAATTGACATTGCTGGTGAATTGTTTTCAGCATCAGGGAGAGCAATTATAGCAAAAAATTACTTAGACGTATACCGCTTTGAATCGTGGGGAGGATCTATTATTCCAACTTATGTTTCTGGACAACAGTTTACTCCTACAACATTGACTCTTGATCCAGGAGTTACAAGACCACCACCGCTTTTGAGTGAAGCTGATTTGTTAAGTTGTATGGATAAGGAGGGTATTGGTACAGATGCAACGATGCATGATCACATAAAGAAGCTATTGGATAGATTTTATGCAACTAAGGACTCAAACACTCATTTCTCACCAACTAATCTTGGAAAGGCACTGGTATTGGGATACGACGATATGGGGTATAAGCTATGGAAACCATACCTCAGAGCTACTATGGAACGAGACATGAAAGCAGTTAGTGAAGGCAATAAGTGCAAAGCTGAAGTTTTGGCGACTTGTTTGCAGCAGATGAAGGCTTGTTTTTTAGATGCAAGGTTGAATAAAATAAAACTTCTCGAAGCCATGGGTATATTTTTCGAAAGATCCAACAGATCTAGTGTGAATGATCAGCATGCAACTGGAGAAATTGTTCGCCGGTGCGGAGTTTGCCAGGAATTAGATATGGTTCTTAAAAAAATCAGGGATGGCAATTACATGGTAGGCTGCCTGGGATATCCGCAGTGCAGGAACGTTGTATGGCTCCCTGGATCCATATCAGAAGCAGCTGTAACCTCTAACATTTGCCAGTCTTGCACTCCAGGTCCTGTTTACTTGATCCAATTCAAATTTCGCTGCCTGGAAATACCACCAAATTACAACCCTAACCATTTGGGTTGCATAGGTGGTTGCGATGTGATTCTTAGGCAATTGACAGAAATATGTGGAACTGGTCGGGGAGTCACACAATCTTCCAATGATGTTCCACGAAGTAACACTAGGCAGGCTGTTTGCATATACTGCCAGGAACCTGGACATTCTTCTAATGACTGCTCTTCTCGGCTTCCCAGTTCCCATCATGCTCAATCACGCAGACAAAGTGGAGAATGTTCAGTTTCATGCAGCACATGTGGCACACCATGCATCATCCGAACTGCTAATAACAGTGGAAGAAAATTCTACTCGTGTCAATCTCAAGAGTGCAACTTCTTTGTATGGGAAGATAGCTTAAACAACGGCACTGGAGGAACTGGTACTTCACGTGCAAGCATGAGGAGTACCCTAGCAGCTAATCCCAGCAGGGGCCGTAGTCGTGGTCGTGGTCGTGGTCGTGGTGGAGCACAAACTCCTTCTACCACTTTCGTATCTGCAACAGGTGAGCCAATATCTGGCAGAAGATGCTTTACTTGTGGTGATCCATCACACTTTGCAAATGCATGCCCAAATCGAGGTACCTGA	2817	44.52	MAGGRTISVLNVAEKPSVAKSVSSILSRNQGLRVREGRSRYNKIFEFNYSIRGQPCHMLVTSVTGHLMELEFEERYRKWGSCDPADLYSAPVLKFVPEVSPSTTDKIDIKRTLEDEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNHHLTLKRARFSALIDRFLFFFLGFCYIVLKYENHLELNSENKSRDIHEAVQNLVQPNQWFADAVDARQEIDLRIGASFTRFQTMLLRDRFVINTATDDRNLILSYGPCQFPTLGFIVERYWEVESHEPEEFWTINCSHNSDEGVATFNWMRGHLFDYTCAATIYEMCVQEPTATVCNVRYQQRLKHPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDCFSQRTDLQAIVQEQQNHPVWGTYARRLLDPGEGLWKNPSNGGHDDKAHPPIHPTKFSPGENGWSQDHNRLYELVVRHFLACVSQPAIGAVTTVEIDIAGELFSASGRAIIAKNYLDVYRFESWGGSIIPTYVSGQQFTPTTLTLDPGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDSNTHFSPTNLGKALVLGYDDMGYKLWKPYLRATMERDMKAVSEGNKCKAEVLATCLQQMKACFLDARLNKIKLLEAMGIFFERSNRSSVNDQHATGEIVRRCGVCQELDMVLKKIRDGNYMVGCLGYPQCRNVVWLPGSISEAAVTSNICQSCTPGPVYLIQFKFRCLEIPPNYNPNHLGCIGGCDVILRQLTEICGTGRGVTQSSNDVPRSNTRQAVCIYCQEPGHSSNDCSSRLPSSHHAQSRRQSGECSVSCSTCGTPCIIRTANNSGRKFYSCQSQECNFFVWEDSLNNGTGGTGTSRASMRSTLAANPSRGRSRGRGRGRGGAQTPSTTFVSATGEPISGRRCFTCGDPSHFANACPNRGT	938

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
15	16419280	16445790	+	Bma013850.1	Bma15g00775	96897

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bma15g00775	938	ProSitePatterns	Prokaryotic DNA topoisomerase I active site.	364	378	IPR023406	GO:0003917
Bma15g00775	938	Pfam	GRF zinc finger	826	862	IPR010666	GO:0008270
Bma15g00775	938	Gene3D	Topoisomerase I, domain 2	211	635	IPR013824	-
Bma15g00775	938	Gene3D	Topoisomerase I, domain 3	275	533	IPR013825	-
Bma15g00775	938	SUPERFAMILY	Prokaryotic type I DNA topoisomerase	9	678	IPR023405	-
Bma15g00775	938	PANTHER	DNA TOPOISOMERASE 3-ALPHA	8	735	-	-
Bma15g00775	938	MobiDBLite	consensus disorder prediction	419	441	-	-
Bma15g00775	938	MobiDBLite	consensus disorder prediction	867	886	-	-
Bma15g00775	938	CDD	TOPRIM_TopoIA_TopoIII	9	164	IPR034144	-
Bma15g00775	938	Pfam	Toprim domain	10	160	IPR006171	-
Bma15g00775	938	SMART	toprim5	8	149	IPR006171	-
Bma15g00775	938	Gene3D	Topoisomerase I, domain 4	335	465	IPR013826	-
Bma15g00775	938	Gene3D	-	2	204	-	-
Bma15g00775	938	ProSiteProfiles	Toprim domain profile.	8	159	IPR006171	-
Bma15g00775	938	ProSiteProfiles	Zinc finger CCHC-type profile.	918	935	IPR001878	GO:0003676\|GO:0008270
Bma15g00775	938	SMART	topIaneu2	327	587	IPR003602	GO:0003677\|GO:0003916\|GO:0006265
Bma15g00775	938	SUPERFAMILY	Retrovirus zinc finger-like domains	780	808	IPR036875	GO:0003676\|GO:0008270
Bma15g00775	938	SUPERFAMILY	Retrovirus zinc finger-like domains	912	936	IPR036875	GO:0003676\|GO:0008270
Bma15g00775	938	Pfam	DNA topoisomerase	205	624	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bma15g00775	938	SMART	c2hcfinal6	790	806	IPR001878	GO:0003676\|GO:0008270
Bma15g00775	938	SMART	c2hcfinal6	919	935	IPR001878	GO:0003676\|GO:0008270
Bma15g00775	938	SMART	topIban2	189	281	IPR003601	GO:0003677\|GO:0003916\|GO:0006265
Bma15g00775	938	CDD	TOP1Ac	208	635	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bma15g00775	938	PRINTS	Prokaryotic DNA topoisomerase I signature	123	136	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bma15g00775	938	PRINTS	Prokaryotic DNA topoisomerase I signature	451	467	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bma15g00775	938	PRINTS	Prokaryotic DNA topoisomerase I signature	549	563	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bma15g00775	938	PRINTS	Prokaryotic DNA topoisomerase I signature	251	269	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bma15g00775	938	PRINTS	Prokaryotic DNA topoisomerase I signature	369	378	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Bma15g00775	938	MobiDBLite	consensus disorder prediction	867	909	-	-
Bma15g00775	938	PANTHER	PROKARYOTIC DNA TOPOISOMERASE	8	735	IPR000380	GO:0003677\|GO:0003917\|GO:0006265

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bma15g00775	K03165	TOP3; DNA topoisomerase III [EC:5.6.2.1]	-	jre:109018851	1495.72

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bma06g01402	Bma-Chr6:50790500	Bma15g00775	Bma-Chr15:16419280	1.98E-98	dispersed
	Bma15g00775	Bma-Chr15:16419280	Bma01g02496	Bma-Chr1:82671441	7.64E-15	dispersed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi4g1325	.	.	.	.	.	.	.	Bma15g00775	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Blo06g00186	.	.	Bpe10g00267	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0007676	1	4	1	1	1	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	2	2	2	1	1	1	2	35

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Bma15g00775	Bma_Chr15	FPKM	44.062252	51.239189	62.168415	61.265221	35.633659	30.82176	37.780838	67.921242	69.389687	74.280922