Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00776 ATGAAGCTCATAGATGCCCCCGACGGGGCCGGTGGACGGACGGTGGTGGTCGGACTGAAATTGGACCCGGAGGGCAGGAAGTTGCTCACTTGGGCTATGGTCAAAGTGGTTCAGCCTGGTGATTCTGTTGTTGCTCTTCATGTCCTCGATTCCATTTCCGGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTCTCTCTCTTACTGAATATTTTCTTCGTTCTGCTTGCAGAGGATTCGTCGTCGTTGATTTCTCTAGTGAAGACCTTCAATTCCTTTCTTACCGTGTATGAAGGTTTCTGCAACTTAAAGCAGGTTGAATTGAAGCTCAAGGTGTGTAGGGGTTCGCCGGTGAAGAAAATTCTCAACCGGGAACTGAAATTGTTCTCCGGTGCTACTTTAATCGTTGGAACTTCCAAAAATCACTCAACCACAGTAGGAATCAAGACCCATTCGAAGGTTGTAAGACAATTTGGATTTGATTTTCTTGAATATGATTTTGATTTGGCTTCAATTAGCGTTGTTTATGGCCTAATTTTCGGTTCCAATTGGCAGATGATGATGCCTGCAAGAAATCTATTGATTGGAGATATATTAACATCAGATCATCCTCCTAATTGCTTATTAAAATCCGGCTCGGATTCTTGGAAGATTTACGTGAATCAGATTTATACAAGCTATTCTCCATCCTCTCCAGTTCAAGATGATCCAGGAAGCAAATTTTTCGAGAATTACCCAAAAAATCCAATGGCCACAATACCGGTTCGAACACAAGAAGCCCTTTTGAGATCGAAGTCGTCTGTAGTTCGAGAAATGTGGCATCCGAAATCCGGTTGGTCATTTCTTCGTCGGCTCGTACCCAATCAGCACCAGCTGGGAAAACAGGTAAAAACAATACCGTTTTCACGGGTGCTAAGCCTCAGTTCTACAGCTTTTGTGTACCCAGATCAGAAGCAGAATATTTGCAGCCATGATGAGGATCAAAATGATTTCTCTCTTCTTTCACCTTCTCACTCCCTCGAAAGCATTCCAAAAGAGTTGCCCGAATCACTTCACAAATACGCCGTGGCTTGCAGATTGTTTACGTATCAGGAACTTTTGCTCGCGACGTCTAACTTTGCGCCAAATAATATCGTCGGGAGAGGTGGAAGTAGTCGAGTTTACTGGGGTGTCTCCCTTGATGGCAAGGAATTGGCAGTGAAAATCTTGAAGCCATCTGAAGATGTCTTCAAGGAGTTTATGCAGGAAATAGAGATCATCACGACTTTGCATCACAAGAACATAATTTCCCTTCAAGGGTTCTGTTTTGAGGACAACCATTTACTCTTAGTCTACAATTTTCTCTCCAGGGGAAGCCTCGAAGAGAATCTCCACGGTAGTTTGAAGGATTCAAATTCGTTTGGTTGGCAAGAGAGGTTCAAGGTTGCTGTAGGCGTGGCCGAGGCGCTTAATTATCTGCACAACGAATGTGCAGACCCCGTGATCCACAGAGACGTGAAATCTTCGAACATTCTTCTTTCGGACGATTTCGAGCCTCGGGTAATTTTTCATGCGAATTCATTACTTCATTCTTGCTATACTTTTCTAATAAACTATCGGACATGTTACTTGGCTCCAGAGTATTTCATGCATGGTAAAGTTAGTGACAAAATAGATGTTTATGCATTCAGTGTTGTTCTCCTCGAACTACTTTCCGGTCGAAAGTCTATCAACAACGACAGTCCAAAGGGTCAAGAAAGCCTCGTAATGTGGGCAAAACCAATTTTGAAGAACGGGAAAGTTTCTCAATTGCTGGATCCAAGTTTAGGGAGTGATTACAATCACGACCAAATAGGAAGAATGATATTGGCAGCTACGCTCTGCATAAAACGCGCACCTAAACATCGACCTCATATGGGTCTCATTTTGAAACTTCTGCAAGGCAATGATGAAATTACGGATTGGGCAAGACAACAAGTTCTTCGTCACGAAGAACTCGATGTCAAGGAGGAACAACCTTTTCCGACAAACATCCAATCTTATCTAAACACGGCTCTTCTTGACTTGGATGACGACTCATCTTCCATGTCGAGTGGCGATCAAAGCGTGTCGTTGGAGGATTATCTTCAAGGTAGATGGAGCCGCTCTTCGAGCTTCGATTAG 2145 43.54 MKLIDAPDGAGGRTVVVGLKLDPEGRKLLTWAMVKVVQPGDSVVALHVLDSISGFSLSLSLSLFSLSLLLNIFFVLLAEDSSSLISLVKTFNSFLTVYEGFCNLKQVELKLKVCRGSPVKKILNRELKLFSGATLIVGTSKNHSTTVGIKTHSKVVRQFGFDFLEYDFDLASISVVYGLIFGSNWQMMMPARNLLIGDILTSDHPPNCLLKSGSDSWKIYVNQIYTSYSPSSPVQDDPGSKFFENYPKNPMATIPVRTQEALLRSKSSVVREMWHPKSGWSFLRRLVPNQHQLGKQVKTIPFSRVLSLSSTAFVYPDQKQNICSHDEDQNDFSLLSPSHSLESIPKELPESLHKYAVACRLFTYQELLLATSNFAPNNIVGRGGSSRVYWGVSLDGKELAVKILKPSEDVFKEFMQEIEIITTLHHKNIISLQGFCFEDNHLLLVYNFLSRGSLEENLHGSLKDSNSFGWQERFKVAVGVAEALNYLHNECADPVIHRDVKSSNILLSDDFEPRVIFHANSLLHSCYTFLINYRTCYLAPEYFMHGKVSDKIDVYAFSVVLLELLSGRKSINNDSPKGQESLVMWAKPILKNGKVSQLLDPSLGSDYNHDQIGRMILAATLCIKRAPKHRPHMGLILKLLQGNDEITDWARQQVLRHEELDVKEEQPFPTNIQSYLNTALLDLDDDSSSMSSGDQSVSLEDYLQGRWSRSSSFD 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16448120 16451090 + Bma013851.2 Bma15g00776 96898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00776 714 ProSitePatterns Protein kinases ATP-binding region signature. 380 402 IPR017441 GO:0005524
Bma15g00776 714 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 78 150 - -
Bma15g00776 714 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 253 708 - -
Bma15g00776 714 ProSiteProfiles Protein kinase domain profile. 374 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma15g00776 714 PANTHER OS01G0253100 PROTEIN 78 150 IPR045271 GO:0004714|GO:0006468
Bma15g00776 714 SUPERFAMILY Protein kinase-like (PK-like) 355 640 IPR011009 -
Bma15g00776 714 PANTHER OS01G0253100 PROTEIN 9 63 IPR045271 GO:0004714|GO:0006468
Bma15g00776 714 PANTHER OS01G0253100 PROTEIN 253 708 IPR045271 GO:0004714|GO:0006468
Bma15g00776 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Bma15g00776 714 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 63 - -
Bma15g00776 714 Gene3D Transferase(Phosphotransferase) domain 1 449 657 - -
Bma15g00776 714 Pfam Protein kinase domain 377 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma15g00776 714 SMART serkin_6 374 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma15g00776 714 CDD USP_Like 14 50 - -
Bma15g00776 714 Gene3D Phosphorylase Kinase; domain 1 341 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00776 - - - csv:101216673 669.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00472 Bma15g00776 CCT
Bma06g00472 Bma15g00776 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00472 Bma-Chr6:22032634 Bma15g00776 Bma-Chr15:16448120 0 dispersed
Bma09g00442 Bma-Chr9:38313914 Bma15g00776 Bma-Chr15:16448120 0 dispersed
Bma12g00919 Bma-Chr12:40710939 Bma15g00776 Bma-Chr15:16448120 6.96E-120 dispersed
Bma15g00776 Bma-Chr15:16448120 Bma11g00691 Bma-Chr11:15994520 1.31E-66 dispersed
Bma15g00776 Bma-Chr15:16448120 Bma09g00438 Bma-Chr9:38216601 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021426 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66957 PF00069 Pkinase 2.30E-32 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00776 Bma_Chr15 FPKM 8.822682 9.722539 16.445036 18.947672 11.364776 12.735787 11.449461 17.710228 17.99658 17.916761