Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00788 AACCATCTTTGGGATGCGCCTTTCAGCTATGGGTTACGCTCATGTGTCAAGCCTACAGCTAAATATAGAGGTGCCCAAAACTCTGATCGCTACCTCACTGTGAGATGTAATGGCGGATTGAATCAAATGCGCACTGATATATTTGATGAGCTTCATTTCATTGAAACCTTGCAAGGCGATCTCAGGATTGTGAGTCAGCTCCCTAAAGAAATGGAATCTATTCCTAGAGCAAGGAAGCATTTTACTTCCTGGGGGAGTGTGGGTTACTATGAAGAGATGACACAATTGTGGAAAGAGTATCAGGTAGTGATTCATGTTGCAAAATCAGATTCAAGACTTGCCAACAACGATCTTCCTTTAGATGTTCAGAGATTGAGATGTCGTGTGATGTATGAAGCCCTCCGCTTCTCTCCACCCATTGAAAGCTTAGGAAAGAAGCTGGTGGAGCGCCTGAGATCACGAGGAGGGAGATATATTGCTCTTCACCTGAGATATGAGAAAGACATGCTATCTTTCACTGGTTGTACTTATGGTTTGACTGAGTTAGAATCTGAAGAGCTGAGAGTAATGAGGAAAGGACTGGTTGAAGTTTTTGATAAACTGGAAAGTGGAGAATTAAGAGAAGGATCCTCGTTGTCAAATCTAGTGAAGCTGATGCACAAGAACAGGGAAGGAGGTCCGAGGAAGAGAAGAGGTTCGTCACCGGGAGTGAAGGGTCGTGCACGATTCAGGACAGAAGAATCGTTCTACGAAAACCCTTACCCGGAATGTATATGCAAGTCCAAAAGCAACTGA 795 44.03 NHLWDAPFSYGLRSCVKPTAKYRGAQNSDRYLTVRCNGGLNQMRTDIFDELHFIETLQGDLRIVSQLPKEMESIPRARKHFTSWGSVGYYEEMTQLWKEYQVVIHVAKSDSRLANNDLPLDVQRLRCRVMYEALRFSPPIESLGKKLVERLRSRGGRYIALHLRYEKDMLSFTGCTYGLTELESEELRVMRKGLVEVFDKLESGELREGSSLSNLVKLMHKNREGGPRKRRGSSPGVKGRARFRTEESFYENPYPECICKSKSN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16800296 16805524 + Bma013868.2 Bma15g00788 96910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00788 264 PANTHER O-FUCOSYLTRANSFERASE 38 191 263 - -
Bma15g00788 264 PANTHER O-FUCOSYLTRANSFERASE 38 2 47 - -
Bma15g00788 264 PANTHER O-FUCOSYLTRANSFERASE 38 46 191 - -
Bma15g00788 264 PANTHER OS02G0726500 PROTEIN-RELATED 46 191 - -
Bma15g00788 264 PANTHER OS02G0726500 PROTEIN-RELATED 2 47 - -
Bma15g00788 264 Pfam GDP-fucose protein O-fucosyltransferase 45 215 IPR019378 -
Bma15g00788 264 PANTHER OS02G0726500 PROTEIN-RELATED 191 263 - -
Bma15g00788 264 MobiDBLite consensus disorder prediction 223 237 - -
Bma15g00788 264 MobiDBLite consensus disorder prediction 220 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00788 - - - pvy:116139261 318.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00788 Bma-Chr15:16800296 Bma02g00131 Bma-Chr2:1214796 7.78E-18 dispersed
Bma15g00788 Bma-Chr15:16800296 Bma04g01302 Bma-Chr4:43424544 2.06E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1293 . . . Bda10g00396 . . . Bma15g00788 . . . . . Car07g00787 . Cpe19g00529 . Bhi03g01351 . . . . . . Cla01g01516 Cam01g1586 Cec04g1229 Cco04g1300 Clacu01g1611 Cmu01g1497 Cre04g1175 . . Cone6ag1285 . Lsi01g01149 . . Cme08g01083 . Blo06g00195 . . Bpe10g00260 . . . . . Cmo07g00824 . . . . . . . . . . . . . . . . . . . . . Csa06g02782 Chy02g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000721 2 3 3 2 2 2 4 3 3 3 3 3 4 3 3 4 3 6 4 3 3 3 3 3 2 3 3 4 6 2 95
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00788 Bma_Chr15 FPKM 3.066148 1.586586 1.603224 1.415716 21.819237 17.626059 23.899633 0.943408 1.398233 0.864466