Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00790 ATGACTTTCCTAGCCTCAAAGCCGTTCGACTTCATTCAGTTTCCAAAACCCTCGTTTCACTCCAATAGTTTGCTCGTCCGACGTCCGAATTCGTTATCCTACTCGACCCTTCTTGAGAGAGGTGGTTTTACGTCCAAATTTGCTTCTAAAAATGATGCATTTTCATTTCCTTTCCTCAAGCGCCGAAAATTAGAAGTTTGCGATTGCAGAGCTTCAAGCTCGGATTCGGATTTGGTTGTAGCTGCCACAAGAGCAGAGGCAGACGCCGACTCTGCTCAACTATTTGAGAAGCTAAAGGATGCTGAGAGGATGCGTATGGATAAATTGGAAGAATTGCAGAGGAAGGCCAACTTGCAGTTAGAAAGACAGCTTGTCATGGCTTCGTGTTGGAGTAGGTCCTTGTTGACACTTCGTGGGAAACTGAAAGGAACCGAATGGGATCCTGAAAACTCACACAAGATTAATTTTAGTGATTTCATGAGGCTACTTAACTCAAATAATGTCCAGTTCATGGAATATTCAAATTTTGGTCAATCAGTATCAGTGATTCTACCATACTATAAAGATGGGAAAAATAAAAAAATGCAAGAAGGTTCAAAGAATGAAATCACTTTTCGGCGTCATGTGGTTGATCGTATGCCAATTGATTGTTGGAATGATGTCTGGGCAAAGTTGCATCAACAGATAGTTAACGTTGATGTTGTTAATATGAATGTGGTTCACGCAGAAGTGTACTCGACTATTGCCACAACAGTCATATGGTGTATGAGACTTGCCCTTTCTGTTGCGTTGTATCTCTGGATTGATAACTTGATGAGACCAATATATGCAAAGTTGATACCTTGTGATTTAGGAAGTCCAAGAAAAATAACCGCACTTCCACTTAGGCGCCGTGCACTCGGGTCGTTGGGCAAAAGTAGGGCAAAATTTATTTCTGCAGAAGAAACTACCGGTGTTTCTTTTAGCGATTTCGCTGGCCAAGAATATATAAAGAGAGAACTTCAAGAAATTGTACGTATTTTAAAGAATGACGAAGAGTTCCAAGAAAAAGGGATATACTGTCCAAAAGGTGTACTTCTTCATGGGCCTCCTGGAACAGGTAAAACACTTCTGGCTAAAGCTATTGCTGGGGAAGCTGGACTACCGTTCTTTGCTGCAAATGGCACAGACTTTGTAGAGATGTTTGTAGGTGTGGCTGCATCTCGTGTCAAGGATCTTTTTGCTAGTGCCAGATCATTTGCACCCTCTATAATATTCATTGATGAGATAGATGCCATTGGTAGCAAACGTGGTGGGCCTGATATTGGTGGAGGTGGAGCTGAAAGGGAACAAGGCTTGCTTCAGATTTTGACGGAACTAGATGGATTTAAGGTCTCTACATCACAGGTGTTAGTTATTGGGGCCACTAATAGATTGGATATACTTGATCCTGCACTTTTAAGAAAGGGTCGTTTTGACAAGATTATAAGGGTTGGCTTGCCATCAAAAGATGGAAGATTAGCTATATTGAAGGTGCATGCTAGAAATAAATATTTTCGATCAGAAGCAGAAAAGGAATCCTTACTTCAAGAGATTTCTGAGTTAACAGAAGATTTTACTGGGGCAGAGTTGCAGAATATACTGAATGAAGCTGGTATCTTGACTGCTAGAAAAGATCTGGATTACATTGGGCGAGAAGAGTTGCTTGAGGCTTTGAAAAGGCAAAAAGGTACTTTTGAAACAGGCCAGGAAGATAGTACTGAAATTCCTGAGGAATTAAAACTCAGATTGGCATATAGAGAAGCAGCCGTTGCTGTTCTTGCATGCTATTTTCCAGAGACCCATCGCCCTTTTACAGAGACAGATATAAAGTCAATTCGCAGTCATCCAAATATGCAATATGCTGAAGTTCCTGGGAAGGTTTTCTCAAGAAAATCAGATTATGTAAATTCAATAGTGCGTGCATGTGCTCCTCGAGTGATTGAGGAAGAAATGTTTGGCATTGACAACTTGTGTTGGATCTCTGCAAAGGCTACACAAGAAGCTTCAAGACTTGCTGAATTTTTGATTCTGCAGACAGGGATGACAGCGTTTGGTAAAGCTTATTATAGGAATCATGGTGATCTTGTACCAAATCTTGCAGTCAAGCTCGAAGCACTTCGAGATGAATACATGCGTTTTGCTGTGGAAAAATGTGCTTCGATTCTGAGGGAGTATAATGTTGCTGTGGAGACAATAACAGATGTTCTACTCGAGAGGGGAGACATTAAAGCTGAGGAGATTTGGAAAATATATGAAAAGGCTCATCAAGTTCCACAGCCTTCTGTAAATCCTGTTGATGAATATGGGGCCCTAATATATGCCGGAAGATGGGGAATTTATGGGAATTCACTGCCTGGAAGGGTTACATTTGTGCCTGGAAATGTTGGATTTTCAACTTTTGGTGCACCGAGACCAATGGAGACTCAAGTTGTTTATGATGAAACTTGGAAGCTAGTAGATGAAATATGGGACAAAAAGGTTCAAAAGATTAGAGAGGAATCTGTGGGGGATGTTGAAGAGAACAAAGAGAATCCACAACTTCTCATGACCAGTCACTTCCTCTAA 2586 41.07 MTFLASKPFDFIQFPKPSFHSNSLLVRRPNSLSYSTLLERGGFTSKFASKNDAFSFPFLKRRKLEVCDCRASSSDSDLVVAATRAEADADSAQLFEKLKDAERMRMDKLEELQRKANLQLERQLVMASCWSRSLLTLRGKLKGTEWDPENSHKINFSDFMRLLNSNNVQFMEYSNFGQSVSVILPYYKDGKNKKMQEGSKNEITFRRHVVDRMPIDCWNDVWAKLHQQIVNVDVVNMNVVHAEVYSTIATTVIWCMRLALSVALYLWIDNLMRPIYAKLIPCDLGSPRKITALPLRRRALGSLGKSRAKFISAEETTGVSFSDFAGQEYIKRELQEIVRILKNDEEFQEKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTELDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKYFRSEAEKESLLQEISELTEDFTGAELQNILNEAGILTARKDLDYIGREELLEALKRQKGTFETGQEDSTEIPEELKLRLAYREAAVAVLACYFPETHRPFTETDIKSIRSHPNMQYAEVPGKVFSRKSDYVNSIVRACAPRVIEEEMFGIDNLCWISAKATQEASRLAEFLILQTGMTAFGKAYYRNHGDLVPNLAVKLEALRDEYMRFAVEKCASILREYNVAVETITDVLLERGDIKAEEIWKIYEKAHQVPQPSVNPVDEYGALIYAGRWGIYGNSLPGRVTFVPGNVGFSTFGAPRPMETQVVYDETWKLVDEIWDKKVQKIREESVGDVEENKENPQLLMTSHFL 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16842626 16864449 + Bma013871.1 Bma15g00790 96912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00790 861 SUPERFAMILY FtsH protease domain-like 583 764 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Bma15g00790 861 Coils Coil 511 538 - -
Bma15g00790 861 SMART AAA_5 354 495 IPR003593 -
Bma15g00790 861 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 72 828 - -
Bma15g00790 861 ProSitePatterns AAA-protein family signature. 463 481 IPR003960 GO:0005524|GO:0016887
Bma15g00790 861 Pfam AAA+ lid domain 522 562 IPR041569 -
Bma15g00790 861 Coils Coil 84 119 - -
Bma15g00790 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 567 IPR027417 -
Bma15g00790 861 Gene3D Peptidase M41 578 765 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Bma15g00790 861 CDD AAA 325 493 - -
Bma15g00790 861 Pfam ATPase family associated with various cellular activities (AAA) 358 492 IPR003959 GO:0005524|GO:0016887
Bma15g00790 861 Gene3D - 494 577 - -
Bma15g00790 861 Gene3D - 302 492 IPR027417 -
Bma15g00790 861 PANTHER METALLOPROTEASE M41 FTSH 72 828 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00790 - - - mcha:111005436 1376.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00790 Bma-Chr15:16842626 Bma03g00748 Bma-Chr3:6840367 1.63E-81 dispersed
Bma15g00790 Bma-Chr15:16842626 Bma08g00564 Bma-Chr8:33812734 7.90E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1292 . . . . . . . Bma15g00790 . . Cma03g01092 . Car03g00985 . . . Cpe10g00338 Bhi03g01352 . . . . . . Cla01g01517 Cam01g1587 . Cco04g1301 Clacu01g1612 Cmu01g1498 Cre04g1176 . . Cone6ag1286 . Lsi01g01148 . . Cme08g01082 . Blo06g00196 . . Bpe10g00259 . . . . Cmo03g01078 . . . . . . . . . . . . . . . . . . . . . . Csa06g02783 Chy02g01052 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009022 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00790 Bma_Chr15 FPKM 3.089936 1.401246 4.288244 6.414531 7.393659 7.157395 7.458694 5.401578 4.460155 4.199055