Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00824 ATGGATTTAGAAGCAGACATGCAGAGCTCTAACGAAGAAAATGAAGTTTTCTTCGACTCGACAGCGGAGTTTTTGTTAATGGAGGATTCTTGTGGGGGAAAAGAAGAGAGGGGTTATGAAATGTGGACGAAAGAGCCGCAGAGCATAAAGAAAAGGCGGGAAAGTTTTCTTCGAGGGATGGGGTTATCTGAATTTGCTTCTCGGAAGGTCTGTGAAGAGAATGTGGATACGGAAGTTGGTACTTCTTTGAATTTAATGGGGTTAGAAAGGCTGACGGAGAGCAGTGGAGCAGTTTCGAGCTGTTCTTATTCGCCAACTTCGATGTTTGAAAATGTAGAAGATCGAAATAAAATGGAAACTGAGTTTTCATCTTCTTCTCCGCAGCTTGTACATGGCCAAGCAGAGGCTGGTGGAGAAGAAGATAAGAGTTTTGATGAAAGGAAAATCAAATTAAAGAGCTGGTGGAAGTCGTTTATGAGCAAAAGCAGAGCTAAAACGAGTTTGTATGAGGAATTTAAACTGAAATCCGAAACGCCGAAAAGATCGAGGATTAATGTGAAGCAAAACAAAAAGAAATGCATGGAATTATCTGCTCTATATTACAGGCAGAACTTTCGTGCCCACAAGGGATCCGTTTGGACAATGGCATTCAGTCCCAACGGCCAGTTTCTTGCAAGTGGAGGCGAAGATGGAATCGTACGAGTTTGGCGAGTATCGTACAATGACGCCTTGGGTAATTTTTTAACACCCGAAGGCAATTTAGGTAGGAAAGTGAGTGGGAAAAAGAAGAATTTTCTCGGGACACAAACAGGTCGTGGTACTGTCATGGTTCCGGAAAGGCTTTTTCGGATCAAAGAATCACCCGTCCAAGAATTTCACGGCCACTCCAGTGATGTCCTCGACTTGGCATGGACTAATTCCACTTGTCTTCTATCATCTTCGATGGATAAAACAGTTCGTTTGTGGAAAGTGGGCTGCAATAGCTGTTTAAATATTTTTCGTCACAAAGACTATGTTACATGCATCCAGCTCAATCCTGTGGATGAAAACTACTTCATATCTGGGTCTGTTGATGGAAAAGTTCGGATTTGGGGAGTAAAGGAAAAACAGGTGGTCGATTGGATCGATATCCGAGATATAATTACTGCTATATCATACCAACCAAATGGGAAGGGATTTATTGTTGGTTCCATTACCGGCAATTGCCGCTTCTACACATCCACAGATGATTATCTGCAGCTAGATGGAGAGATAAACATTCAAGGAAAAAAGAAGGGCTTGGGCAAAAGAATCACTGGAATACAGTTTTCTCGTGAAAATTCTCAAAGAGTGATGATAACGTCAGAAGACTCTAAAGTCTATATCTTCAAAGGTCTTGACATCATTCACAAATATAAAGGTCTTCCAAAGTCGGGAAGCCAAATGTGGGGTTCGTTTACTCTGACCGAGAAGCATATTGTTTCCGTCGGAAACGACTCCCGTGTTTACATTTGGAACCACGAAACGGACAGTTTTCCGGCATGCGTGAAGAAACGGAGAAAAACCATCACTTCTTGCGAGCATTTTTTCTCGGAAGGCGTTTCGGTTGCAATTCCATGGAAGGGCCACGGAAGCAAATCGGGAAGTTTCAGAAGTTCTGTGGATGTTCCGAATTCTTTCTCCTCCAGTCGAGATTCGGAGAATTCTTTGTTTGGGAATTGGTTATTTGTCGATGGCCTGTCCAAAGGCTCGGCCACTTGGCCGGAAGAGAAGCTCCTTCCTCAATGGAATTCGCCCGGTGAAGATATTGCCAACTCGATCAATCCAGTTATGTGGGGCCTCGTTATTGTAGGAGCTGGATTGGACGGAACAATTAGGACGTTCCACAACTACGGATTGCCTGTAAAGCTTTAG 1893 43.32 MDLEADMQSSNEENEVFFDSTAEFLLMEDSCGGKEERGYEMWTKEPQSIKKRRESFLRGMGLSEFASRKVCEENVDTEVGTSLNLMGLERLTESSGAVSSCSYSPTSMFENVEDRNKMETEFSSSSPQLVHGQAEAGGEEDKSFDERKIKLKSWWKSFMSKSRAKTSLYEEFKLKSETPKRSRINVKQNKKKCMELSALYYRQNFRAHKGSVWTMAFSPNGQFLASGGEDGIVRVWRVSYNDALGNFLTPEGNLGRKVSGKKKNFLGTQTGRGTVMVPERLFRIKESPVQEFHGHSSDVLDLAWTNSTCLLSSSMDKTVRLWKVGCNSCLNIFRHKDYVTCIQLNPVDENYFISGSVDGKVRIWGVKEKQVVDWIDIRDIITAISYQPNGKGFIVGSITGNCRFYTSTDDYLQLDGEINIQGKKKGLGKRITGIQFSRENSQRVMITSEDSKVYIFKGLDIIHKYKGLPKSGSQMWGSFTLTEKHIVSVGNDSRVYIWNHETDSFPACVKKRRKTITSCEHFFSEGVSVAIPWKGHGSKSGSFRSSVDVPNSFSSSRDSENSLFGNWLFVDGLSKGSATWPEEKLLPQWNSPGEDIANSINPVMWGLVIVGAGLDGTIRTFHNYGLPVKL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 20240482 20243339 + Bma013946.1 Bma15g00824 96946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00824 630 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Bma15g00824 630 PRINTS G protein beta WD-40 repeat signature 224 238 IPR020472 -
Bma15g00824 630 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Bma15g00824 630 SMART WD40_4 367 406 IPR001680 GO:0005515
Bma15g00824 630 SMART WD40_4 198 237 IPR001680 GO:0005515
Bma15g00824 630 SMART WD40_4 417 457 IPR001680 GO:0005515
Bma15g00824 630 SMART WD40_4 458 499 IPR001680 GO:0005515
Bma15g00824 630 SMART WD40_4 285 323 IPR001680 GO:0005515
Bma15g00824 630 SMART WD40_4 326 365 IPR001680 GO:0005515
Bma15g00824 630 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 239 - -
Bma15g00824 630 MobiDBLite consensus disorder prediction 123 142 - -
Bma15g00824 630 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 324 - -
Bma15g00824 630 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 11 630 - -
Bma15g00824 630 Gene3D - 188 537 IPR015943 GO:0005515
Bma15g00824 630 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 324 IPR001680 GO:0005515
Bma15g00824 630 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 367 - -
Bma15g00824 630 SUPERFAMILY WD40 repeat-like 199 619 IPR036322 GO:0005515
Bma15g00824 630 Pfam WD domain, G-beta repeat 287 323 IPR001680 GO:0005515
Bma15g00824 630 Pfam WD domain, G-beta repeat 328 364 IPR001680 GO:0005515
Bma15g00824 630 Pfam WD domain, G-beta repeat 204 236 IPR001680 GO:0005515
Bma15g00824 630 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 246 IPR001680 GO:0005515
Bma15g00824 630 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 374 IPR001680 GO:0005515
Bma15g00824 630 PANTHER WD REPEAT DOMAIN 44 11 630 IPR040324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00824 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101207772 655.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00505 Bma-Chr6:25250304 Bma15g00824 Bma-Chr15:20240482 0 dispersed
Bma06g00513 Bma-Chr6:26694669 Bma15g00824 Bma-Chr15:20240482 1.17E-155 dispersed
Bma08g00392 Bma-Chr8:9571394 Bma15g00824 Bma-Chr15:20240482 2.49E-126 dispersed
Bma10g01307 Bma-Chr10:46463325 Bma15g00824 Bma-Chr15:20240482 9.97E-126 dispersed
Bma12g01219 Bma-Chr12:45091080 Bma15g00824 Bma-Chr15:20240482 5.31E-128 dispersed
Bma14g02015 Bma-Chr14:43527149 Bma15g00824 Bma-Chr15:20240482 1.63E-128 dispersed
Bma15g00824 Bma-Chr15:20240482 Bma15g00603 Bma-Chr15:7614787 4.23E-15 dispersed
Bma15g00824 Bma-Chr15:20240482 Bma03g01033 Bma-Chr3:11964516 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1215 . . Bda04g00343 Bda10g00347 . . . Bma15g00824 Cmo02g00591 Cmo20g01088 Cma03g01072 Cma07g00780 Car03g00965 Car07g00768 . . . Bhi03g01397 . . . Hepe04g1135 . . Cla01g01537 Cam01g1607 Cec04g1254 Cco04g1326 Clacu01g1634 Cmu01g1521 Cre04g1199 . . . . Lsi01g01125 . . Cme08g01047 . . . . . Bpe06g00281 . . . Cmo03g01066 Cmo07g00804 . Cma20g01077 . . . . Bhi10g02345 Tan07g0901 . . . . . Cla02g00077 Cam02g0079 Cec02g0082 Cco02g0073 Clacu02g0077 Cmu02g0076 Cre02g0416 Lsi10g00702 Csa06g02812 Chy02g01022 Cme11g00081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00824 Bma_Chr15 FPKM 17.360136 16.46497 59.04406 58.143959 17.739161 19.937349 16.948328 5.271057 5.524097 5.192854