Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00848 ATGGCAAATGGGTTCGGAGAATCAACTAAGGCTCCACCTCAGAACTCTTTTAGTTCAAGCAATGGCAACAACTCTAACAACGAAGCAGGTGATTTTGAATGCAATATCTGCTTCGAATTAGCTCAAGACCCAATTGTAACTCTCTGCGGCCACCTCTTTTGCTGGCCTTGTCTTTACAAATGGCTGCACTATCACTCTCACTCACAGGAATGCCCTGTTTGCAAGGCTCTTATCCAGGAAGAGAAGTTGGTTCCTCTTTATGGCAGGGGCAAAACTCAAGCCGACCCTCGATCGAAGTCATACCCTAGTTTCGATATTCCAAATCGCCCTTCAGGACAAAGGCCTGATACGGCCCCTCCACCGCAAGCTAATCACTTTACAAATCACGGGTTTGGATTTATGGGCGGATTCGCACCAGTGGCATCCGCCAGGTTTGGGAACTTCACATTGGCTACTGCTTTTGGAGGTCTAATTCCGTCTTTATTTAACATTCAGTTTCATGGATATCCTGATGCCACTGTCTATGGTACTACTTCTGGTTTTCCTTATGCATTTAATACATATCATGGTGGTCAAGCTCACGGTTTTCCCCAACCTCCAAACCGGCGGCAGCCGGCTGATAATATACTGAAGAATCTCCTCTTGCTGATAGGTGTATTTGTCATTCTTGCTCTTCTATGTTGTTAG 687 45.71 MANGFGESTKAPPQNSFSSSNGNNSNNEAGDFECNICFELAQDPIVTLCGHLFCWPCLYKWLHYHSHSQECPVCKALIQEEKLVPLYGRGKTQADPRSKSYPSFDIPNRPSGQRPDTAPPPQANHFTNHGFGFMGGFAPVASARFGNFTLATAFGGLIPSLFNIQFHGYPDATVYGTTSGFPYAFNTYHGGQAHGFPQPPNRRQPADNILKNLLLLIGVFVILALLCC 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 21720597 21721283 - Bma013985.1 Bma15g00848 96970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00848 228 MobiDBLite consensus disorder prediction 1 24 - -
Bma15g00848 228 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 227 - -
Bma15g00848 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Bma15g00848 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bma15g00848 228 SUPERFAMILY RING/U-box 30 87 - -
Bma15g00848 228 MobiDBLite consensus disorder prediction 8 24 - -
Bma15g00848 228 CDD RING-HC_AtRMA_like 32 76 - -
Bma15g00848 228 SMART ring_2 34 74 IPR001841 -
Bma15g00848 228 MobiDBLite consensus disorder prediction 89 122 - -
Bma15g00848 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Bma15g00848 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 96 IPR013083 -
Bma15g00848 228 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 IPR018957 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01075 Bma-Chr3:13125784 Bma15g00848 Bma-Chr15:21720597 5.55E-117 dispersed
Bma04g00198 Bma-Chr4:1756226 Bma15g00848 Bma-Chr15:21720597 6.76E-40 dispersed
Bma14g01014 Bma-Chr14:11832992 Bma15g00848 Bma-Chr15:21720597 2.34E-25 dispersed
Bma15g00848 Bma-Chr15:21720597 Bma01g02302 Bma-Chr1:80598059 1.22E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00848 K10666 - mnt:21392517 399.823