Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00862 ATGGAAAACCTTCAAAACTCCTACATGGAAAGCCAGATTTCTTCTGACCTACTATTGGGTCTAATTACTGGACTCCATGGAAGCATTTCGAAGCTCGAGTGTCTTCGACCTTCAAAGCAGGTTAATACCCTCTTCACGAACCTCGTCAATCTTTGCATTCTTCCATCCTCCATCGACGTCAGGACATTGCCGGAAGAAGATCAGATCATGCGCAGACAGCTCATTTGTCTCTGCGGGAAAGCCGAGGGGCTTTTAGAGCTCGAGTTCTCAAACTTCCTCACCAAAATACCACAACCCTTAAACAACCTCAACCTGTTCCCTTACTATGGAAACTATGTCAAGCTAGCAAACCTAGAGTATGGAATTTTAAGGGAACAAGGGGTGGTCGATCCCAAAAAAGTTGCCTTCATTGGTTCTGGTTCAATGCCTCTAACATCGATCATAATGGCTACCCAACACATGAAATTCACTAATTTTGATAATTTTGACATCGACAAGAGCGCGAATGATGTGGCTCGACAAATAGTAGCTTCTGATGCTGAGCTTAAGGCGAGGATGAAGTTCTACACGAGAGACATACATGACGTAAGAGAGCAACTTGGTGAGTATGACTGCATTTTCTTGGCCGCACTCGTTGGGATGAACAAAGACGAGAAGAAGAAGATTTTAGGGCATGTGAGAAAATACATGCACAAAGGAGGAATTTTTCTGGTAAGAAGTGCAAATGGTGCTAGAGCTTTTTTGTACCCTATAGTTGATGAGGATGATTTGGTGGGTTTTGAAGTTCTCTCCATTTTTCATCCAACTGATGATGTTGTCAACTCAGTGATTCTGGTTCAGAAGCCATAA 849 42.99 MENLQNSYMESQISSDLLLGLITGLHGSISKLECLRPSKQVNTLFTNLVNLCILPSSIDVRTLPEEDQIMRRQLICLCGKAEGLLELEFSNFLTKIPQPLNNLNLFPYYGNYVKLANLEYGILREQGVVDPKKVAFIGSGSMPLTSIIMATQHMKFTNFDNFDIDKSANDVARQIVASDAELKARMKFYTRDIHDVREQLGEYDCIFLAALVGMNKDEKKKILGHVRKYMHKGGIFLVRSANGARAFLYPIVDEDDLVGFEVLSIFHPTDDVVNSVILVQKP 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 22857385 22858233 - Bma014007.1 Bma15g00862 96984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00862 282 Pfam Nicotianamine synthase protein 15 281 IPR004298 GO:0030410|GO:0030418
Bma15g00862 282 PANTHER NICOTIANAMINE SYNTHASE 3 4 282 IPR004298 GO:0030410|GO:0030418
Bma15g00862 282 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 282 IPR004298 GO:0030410|GO:0030418
Bma15g00862 282 PANTHER NICOTIANAMINE SYNTHASE 4 282 - -
Bma15g00862 282 CDD AdoMet_MTases 162 238 - -
Bma15g00862 282 Gene3D Vaccinia Virus protein VP39 24 282 IPR029063 -
Bma15g00862 282 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 242 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00862 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - rcu:8261713 414.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00704 Bma-Chr7:15795057 Bma15g00862 Bma-Chr15:22857385 1.73E-172 dispersed
Bma14g01297 Bma-Chr14:23618880 Bma15g00862 Bma-Chr15:22857385 3.25E-90 dispersed
Bma14g01298 Bma-Chr14:23637875 Bma15g00862 Bma-Chr15:22857385 6.03E-95 dispersed
Bma15g00862 Bma-Chr15:22857385 Bma13g00601 Bma-Chr13:14215672 2.29E-93 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g00617 . 1 318 Nicotianamine Synthase Gene Family AT1G09240 60.6 9.0e-107 383.6
Bma14g01298 BCT 1 271 Nicotianamine Synthase Gene Family AT1G09240 65.3 2.4e-99 359.0
Bma14g01297 . 1 314 Nicotianamine Synthase Gene Family AT1G09240 58.8 9.0e-99 357.1
Bma13g00601 BCT 1 285 Nicotianamine Synthase Gene Family AT1G09240 61.2 8.4e-97 350.5
Bma07g00704 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 53.0 3.8e-73 271.9
Bma15g00862 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 54.1 1.4e-72 270.0
Bma01g00617 . 3 318 Nicotianamine Synthase Gene Family AT1G56430 58.4 1.2e-101 366.7
Bma14g01298 BCT 3 271 Nicotianamine Synthase Gene Family AT1G56430 64.7 7.0e-99 357.5
Bma14g01297 . 3 314 Nicotianamine Synthase Gene Family AT1G56430 57.2 1.7e-97 352.8
Bma13g00601 BCT 4 306 Nicotianamine Synthase Gene Family AT1G56430 55.3 1.8e-94 342.8
Bma07g00704 . 11 281 Nicotianamine Synthase Gene Family AT1G56430 52.0 4.1e-75 278.5
Bma15g00862 . 16 281 Nicotianamine Synthase Gene Family AT1G56430 53.0 5.0e-73 271.6
Bma01g00617 . 1 311 Nicotianamine Synthase Gene Family AT5G04950 57.9 1.3e-100 363.2
Bma14g01298 BCT 1 271 Nicotianamine Synthase Gene Family AT5G04950 62.2 4.5e-98 354.8
Bma14g01297 . 1 296 Nicotianamine Synthase Gene Family AT5G04950 56.0 1.0e-94 343.6
Bma13g00601 BCT 1 303 Nicotianamine Synthase Gene Family AT5G04950 55.6 3.9e-94 341.7
Bma14g01298 BCT 1 271 Nicotianamine Synthase Gene Family AT5G56080 61.7 7.1e-96 347.4
Bma01g00617 . 1 313 Nicotianamine Synthase Gene Family AT5G56080 56.1 1.2e-95 346.7
Bma14g01297 . 1 296 Nicotianamine Synthase Gene Family AT5G56080 56.2 7.4e-93 337.4
Bma13g00601 BCT 1 303 Nicotianamine Synthase Gene Family AT5G56080 55.6 1.6e-92 336.3
Bma07g00704 . 15 281 Nicotianamine Synthase Gene Family AT5G56080 50.4 7.9e-71 264.2
Bma15g00862 . 15 281 Nicotianamine Synthase Gene Family AT5G56080 50.7 3.0e-70 262.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00862 Bma_Chr15 FPKM 13.514688 14.293893 20.629463 22.295527 18.22883 16.599487 18.018812 9.579807 9.880667 10.422362