Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00872 ATGAGTAATACGATGGAGAGTTCATCGGGTGATTTACCATCTGAATCAAGTGCCAAAACATCTACTGATAAAAATTCGATTTCTGATTTTTCATCACAAGATAATGCTGGCAGTCACTTAGCATCAAAGTTTTCTGCTTCTGGTGTATCATCTTGGGCTAGAAGTTTCAAATTTCCTCAGCAATTGGGAGGGGAAGCAGCGCATCCAAAAGAAGGAAATGCCATGATGTCGACATTCGCACGTTTCACTGGTGGTTTTGGTTTGGGTGCTCCTTCAGCCACTTCAGAGCCAAATAAGGACAGTGCTGCAACGACTGCACCATATGGTGTGGTAGAGTCGCTTACAAAAGGAATAGTTGACTCATCTCGTAGTGCTGTAAAAGCAGTGCAGGTCAAGGCTCGACATATTGTTTCTCAGAATAAACGAAGATACCAGGAGGGAGGTTTTGATTTAGATATGACTTATATCACCGAGAATGTTATTGCTATGGGATTCCCTGCTGGTGACATAAGCTCTGGGTTTTTCGGATATCTTGAGGGTTTTTATCGAAATCACATGGAAGAAGTGATCAAATTCTTTGAATCACACCACCAGGGAAAGTACAAAGTATATAATCTTTGTTCAGAGCGGTTGTATGATGCCACCTTGTTTGAAGGGAAGGTTGCGAATTTCCCATTTGATGATCATAACTGCCCATCTTTACATCTTATAAAATCATTTTGTCAAAGTGCATATTCATGGCTAAAGGATGACATTGAGAATGTTGTGGTTGTTCATTGTAAAGCTGGTATGGGAAGGACAGGCTTAATGATTTGTAGCCTTCTCTTGTTCATCAAGATGTTCCCAACGGCAGAGGAAGCAATTAATTATTTCAACCAGAAGAGATGTATTGATGGAAAGGCTTTGGTTCTCCCTAGTCAGATTAGGTATGTCAAATATTTTGAAAGCACTTTAACGTCTTCAAATGGAGAAAATCATCATGGACGTAGGTGCATGCTTCGAGGTTTTCGGATTTACAAATGCCCTAATTGGCTTAGACCTTCCCTTACAATTTCTGATCACAAAGGAATTTTATTCTCAACTAGGAAACATCCGAAAACTAAGGATCTAATGCCAGAAGATTTCTGGCTTCGTGCAACAAAGAAAGGATTTGTGGTGTTTGCACTACCTGGAGAGCCTGGTCTGACTGAAGTGGTTGGGGACTTCAAAATCCATTTTCAGGACCGGCAGGGAGATTTCTACTGTTGGTTAAATACCGCAATGATTGAAAACAGAATTTTTTTGAATGCCAATGATCTGGACGGTTTTGAGAAGAGAAATCTTTCTATTCCTGGGTTCCAAGTTGAAGTTGTGATGATTGACTATGACGGGACAACATCAAAGTCTGTACCTTTTTCTGGCAAACCCTCTAATAGTAGCTCTGCTACTAGTCAAGCTTCCATTAATGAAGTTTCAGCTCCAGCATCAAAGAGCAAAGGAGACACTGATGATGTGTTTTCCGATAGCGATGGAGAAGACACTAAGCCAACAAATAGTGTATCGGCCAAACCTGCTCAGAAGTCCATTATGTCAGAGCAAATAGCAACTTTAGGGGATTCTGCTGCTCAACTATCACTGAACACGGAGACCTGTGCTTCAAAAGAACTTATTGATGGAGATTTGAGACCTTCCATGGGCATGGAAACTCAACGCCAAGAGCAGAGTGATTTCAAGGCCATATCTGCTGATGTCTCGGTTTTCAGTTTTGGAGACGAAGATGATTTAGAAAGCGACTGA 1776 41.1 MSNTMESSSGDLPSESSAKTSTDKNSISDFSSQDNAGSHLASKFSASGVSSWARSFKFPQQLGGEAAHPKEGNAMMSTFARFTGGFGLGAPSATSEPNKDSAATTAPYGVVESLTKGIVDSSRSAVKAVQVKARHIVSQNKRRYQEGGFDLDMTYITENVIAMGFPAGDISSGFFGYLEGFYRNHMEEVIKFFESHHQGKYKVYNLCSERLYDATLFEGKVANFPFDDHNCPSLHLIKSFCQSAYSWLKDDIENVVVVHCKAGMGRTGLMICSLLLFIKMFPTAEEAINYFNQKRCIDGKALVLPSQIRYVKYFESTLTSSNGENHHGRRCMLRGFRIYKCPNWLRPSLTISDHKGILFSTRKHPKTKDLMPEDFWLRATKKGFVVFALPGEPGLTEVVGDFKIHFQDRQGDFYCWLNTAMIENRIFLNANDLDGFEKRNLSIPGFQVEVVMIDYDGTTSKSVPFSGKPSNSSSATSQASINEVSAPASKSKGDTDDVFSDSDGEDTKPTNSVSAKPAQKSIMSEQIATLGDSAAQLSLNTETCASKELIDGDLRPSMGMETQRQEQSDFKAISADVSVFSFGDEDDLESD 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 25723058 25736667 + Bma014028.1 Bma15g00872 96994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00872 591 SMART PTEN_C2_2 326 454 IPR014020 -
Bma15g00872 591 MobiDBLite consensus disorder prediction 462 520 - -
Bma15g00872 591 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 12 591 - -
Bma15g00872 591 ProSiteProfiles Phosphatase tensin-type domain profile. 142 321 IPR029023 -
Bma15g00872 591 MobiDBLite consensus disorder prediction 1 38 - -
Bma15g00872 591 ProSiteProfiles C2 tensin-type domain profile. 328 455 IPR014020 -
Bma15g00872 591 ProSitePatterns Tyrosine specific protein phosphatases active site. 258 268 IPR016130 GO:0016311|GO:0016791
Bma15g00872 591 MobiDBLite consensus disorder prediction 462 489 - -
Bma15g00872 591 Gene3D Protein tyrosine phosphatase superfamily 127 324 IPR029021 -
Bma15g00872 591 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 155 318 IPR029021 -
Bma15g00872 591 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 12 591 - -
Bma15g00872 591 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 256 295 IPR000387 GO:0016311|GO:0016791
Bma15g00872 591 MobiDBLite consensus disorder prediction 505 520 - -
Bma15g00872 591 CDD PTP_PTEN 152 315 IPR045101 GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00437 Bma-Chr2:6538711 Bma15g00872 Bma-Chr15:25723058 5.15E-47 dispersed
Bma08g00514 Bma-Chr8:27821531 Bma15g00872 Bma-Chr15:25723058 0 dispersed
Bma15g00872 Bma-Chr15:25723058 Bma02g00009 Bma-Chr2:210466 8.23E-07 dispersed
Bma15g00872 Bma-Chr15:25723058 Bma03g01356 Bma-Chr3:29597487 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00872 K01110 - qsu:112030067 748.429