Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00913 ATGAAAATTAATATCGGAAAAGAAGACATTTATACTCCTGTGCCTAATCCAAATTCTATGGTGATGCACTCGTTTCTTTTGGATGAAAATCATGTTTATGATGGTAGTGAGTCGGGAACAGAAGAAGAGCAGTCAGCTTTCATGAAGGAGCTTGAAAATTTTTTCAGGGAGAGAGCAATGGAATTTAAGCCACCCAAGTTCTATGGAGAGGGCCTGAATTGCCTCAAGTTGTGGAGAGCTGTGAATAGGTTGGGTGGCTACGAAAAGGTAACTTCATGCAAATTATGGCGACAAGTGGGAGAGTCCTTCAGGCCCCCAAATACCCTTCCTTATTACTCATTAGTTAATAATATTTTTATTTTTATTTTTATTTTTTTACTCTTCTACATTTATTTTTGCAGGACTTGCACTACGGTGTCATGGACTTTTCGAGGATTCTACGAAAAGGCACTTCTTGATTATGAGAGGCAAACTCATGGAGCAGAGCTTCCTATACCTATTATTTCCAATTCCGAGTCAATAAATATGGAGAACCAGGGATCTGCAGTTGGTAGAGCACGAAGGGATGCTGCTGCACGTGCTATGCAGGGCTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTGTTATGAAGGATAAGAATTCTCTCTCTGTGCAAAAGCGTGAAAAACAGCTCAAAAACATTGGTGTATTCAAACGTAAGAAATCACCGTATATGGAGCACGATGTTAAAGCTGTGCGTAGTAAAACATCAAAACCTCAAACGGATACAACAGTAATAGATATTGGACTTCCAGCTGATTGGGTGAAGATCAATGTACAGAAAACTAAAGATTGTTATGAGGTCTATGCTTTAGTTCCAGGACTTCTGCGAGAGGAGGTCCGTGTTCAATCAGATCCAGCAGGAAGACTTGTTATTAGTGGTGAACCTGAGCATCCTGACAATCCATGGGGTGTCACACCCTTCAAGAAGGTGGTTAGCCTACCTTCAAGGATCGATCCGCATCAGACATCTGCAGTTGTGACCTTGCACGGACAGTTGTTTGTTCGAGTCCCATTTGAGCAGTCGGAGTGA 1086 41.99 MKINIGKEDIYTPVPNPNSMVMHSFLLDENHVYDGSESGTEEEQSAFMKELENFFRERAMEFKPPKFYGEGLNCLKLWRAVNRLGGYEKVTSCKLWRQVGESFRPPNTLPYYSLVNNIFIFIFIFLLFYIYFCRTCTTVSWTFRGFYEKALLDYERQTHGAELPIPIISNSESINMENQGSAVGRARRDAAARAMQGWHSQRLLGNGEVSDPVMKDKNSLSVQKREKQLKNIGVFKRKKSPYMEHDVKAVRSKTSKPQTDTTVIDIGLPADWVKINVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 31946490 31961763 - Bma014126.1 Bma15g00913 97035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00913 361 ProSiteProfiles ARID domain profile. 41 159 IPR001606 GO:0003677
Bma15g00913 361 Pfam ARID/BRIGHT DNA binding domain 44 155 IPR001606 GO:0003677
Bma15g00913 361 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 134 360 - -
Bma15g00913 361 SMART ARID_2 38 155 - -
Bma15g00913 361 CDD ACD_sHsps-like 276 356 - -
Bma15g00913 361 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 23 109 IPR045147 GO:0006357
Bma15g00913 361 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 134 360 IPR045147 GO:0006357
Bma15g00913 361 Pfam Hsp20/alpha crystallin family 278 360 IPR002068 -
Bma15g00913 361 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 261 361 IPR002068 -
Bma15g00913 361 SUPERFAMILY HSP20-like chaperones 270 357 IPR008978 -
Bma15g00913 361 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 23 109 - -
Bma15g00913 361 SUPERFAMILY ARID-like 36 162 IPR036431 GO:0003677
Bma15g00913 361 CDD ARID 43 155 - -
Bma15g00913 361 Gene3D - 41 165 IPR036431 GO:0003677
Bma15g00913 361 SMART bright_3 42 160 IPR001606 GO:0003677
Bma15g00913 361 Gene3D - 243 361 IPR008978 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00689 Bma-Chr1:6328607 Bma15g00913 Bma-Chr15:31946490 1.81E-128 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58512 PF01388 ARID 1.40E-12 CL0123 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00913 - - csv:101205984 540.806