Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00913 ATGAAAATTAATATCGGAAAAGAAGACATTTATACTCCTGTGCCTAATCCAAATTCTATGGTGATGCACTCGTTTCTTTTGGATGAAAATCATGTTTATGATGGTAGTGAGTCGGGAACAGAAGAAGAGCAGTCAGCTTTCATGAAGGAGCTTGAAAATTTTTTCAGGGAGAGAGCAATGGAATTTAAGCCACCCAAGTTCTATGGAGAGGGCCTGAATTGCCTCAAGTTGTGGAGAGCTGTGAATAGGTTGGGTGGCTACGAAAAGGTAACTTCATGCAAATTATGGCGACAAGTGGGAGAGTCCTTCAGGCCCCCAAATACCCTTCCTTATTACTCATTAGTTAATAATATTTTTATTTTTATTTTTATTTTTTTACTCTTCTACATTTATTTTTGCAGGACTTGCACTACGGTGTCATGGACTTTTCGAGGATTCTACGAAAAGGCACTTCTTGATTATGAGAGGCAAACTCATGGAGCAGAGCTTCCTATACCTATTATTTCCAATTCCGAGTCAATAAATATGGAGAACCAGGGATCTGCAGTTGGTAGAGCACGAAGGGATGCTGCTGCACGTGCTATGCAGGGCTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTGTTATGAAGGATAAGAATTCTCTCTCTGTGCAAAAGCGTGAAAAACAGCTCAAAAACATTGGTGTATTCAAACGTAAGAAATCACCGTATATGGAGCACGATGTTAAAGCTGTGCGTAGTAAAACATCAAAACCTCAAACGGATACAACAGTAATAGATATTGGACTTCCAGCTGATTGGGTGAAGATCAATGTACAGAAAACTAAAGATTGTTATGAGGTCTATGCTTTAGTTCCAGGACTTCTGCGAGAGGAGGTCCGTGTTCAATCAGATCCAGCAGGAAGACTTGTTATTAGTGGTGAACCTGAGCATCCTGACAATCCATGGGGTGTCACACCCTTCAAGAAGGTGGTTAGCCTACCTTCAAGGATCGATCCGCATCAGACATCTGCAGTTGTGACCTTGCACGGACAGTTGTTTGTTCGAGTCCCATTTGAGCAGTCGGAGTGA 1086 41.99 MKINIGKEDIYTPVPNPNSMVMHSFLLDENHVYDGSESGTEEEQSAFMKELENFFRERAMEFKPPKFYGEGLNCLKLWRAVNRLGGYEKVTSCKLWRQVGESFRPPNTLPYYSLVNNIFIFIFIFLLFYIYFCRTCTTVSWTFRGFYEKALLDYERQTHGAELPIPIISNSESINMENQGSAVGRARRDAAARAMQGWHSQRLLGNGEVSDPVMKDKNSLSVQKREKQLKNIGVFKRKKSPYMEHDVKAVRSKTSKPQTDTTVIDIGLPADWVKINVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 31946490 31961763 - Bma014126.1 Bma15g00913 97035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00913 361 ProSiteProfiles ARID domain profile. 41 159 IPR001606 GO:0003677
Bma15g00913 361 Pfam ARID/BRIGHT DNA binding domain 44 155 IPR001606 GO:0003677
Bma15g00913 361 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 134 360 - -
Bma15g00913 361 SMART ARID_2 38 155 - -
Bma15g00913 361 CDD ACD_sHsps-like 276 356 - -
Bma15g00913 361 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 23 109 IPR045147 GO:0006357
Bma15g00913 361 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 134 360 IPR045147 GO:0006357
Bma15g00913 361 Pfam Hsp20/alpha crystallin family 278 360 IPR002068 -
Bma15g00913 361 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 261 361 IPR002068 -
Bma15g00913 361 SUPERFAMILY HSP20-like chaperones 270 357 IPR008978 -
Bma15g00913 361 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 23 109 - -
Bma15g00913 361 SUPERFAMILY ARID-like 36 162 IPR036431 GO:0003677
Bma15g00913 361 CDD ARID 43 155 - -
Bma15g00913 361 Gene3D - 41 165 IPR036431 GO:0003677
Bma15g00913 361 SMART bright_3 42 160 IPR001606 GO:0003677
Bma15g00913 361 Gene3D - 243 361 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00913 - - - csv:101205984 540.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00689 Bma-Chr1:6328607 Bma15g00913 Bma-Chr15:31946490 1.81E-128 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g01290 BCT 27 340 ARID Transcription Factor Family AT1G04880 60.8 1.6e-98 356.7
Bma04g01053 BCT 27 272 ARID Transcription Factor Family AT1G04880 55.5 2.1e-69 260.0
Bma01g00689 . 151 430 ARID Transcription Factor Family AT1G20910 66.4 1.2e-100 363.6
Bma15g00913 . 37 329 ARID Transcription Factor Family AT1G20910 53.8 3.0e-80 295.8
Bma01g02389 . 1 295 ARID Transcription Factor Family AT1G76110 59.4 8.9e-89 323.9
Bma01g00689 . 119 460 ARID Transcription Factor Family AT1G76510 67.0 2.4e-123 439.1
Bma15g00913 . 14 359 ARID Transcription Factor Family AT1G76510 55.7 4.5e-101 365.2
Bma13g01143 . 42 324 ARID Transcription Factor Family AT3G13350 52.2 1.7e-81 299.7
Bma10g00669 . 2 801 ARID Transcription Factor Family AT3G43240 55.3 6.2e-252 867.1
Bma10g00710 . 1 774 ARID Transcription Factor Family AT3G43240 56.6 6.2e-252 867.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58512 PF01388 ARID 1.40E-12 CL0123 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00913 Bma_Chr15 FPKM 6.144144 7.897125 4.867737 5.458989 2.344683 3.231292 4.390617 13.080785 10.683044 18.116022