Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00948 ATGGGTGAAGGGAGAGAAGGAGATTGGGAGTGCAGTGGCTGCAAGAACAGAAACTACGCTTTCAGATCGTTCTGTAACAGATGTAAGCAGCCTCGCCTTCTGGTTGATAACAAAACCCCAGCTGACTCTAAATGGCTCCCTCGAATCGGAGACTGGATCTGCACAGGTTGCACTAACAACAATTATGCATCGCGAGAAAAGTGCAAAAAGTGCGGCCAACCGAAGGAGATTGCTGCAATTCCAGCCATCGCATTGCATGGAGCTGCTTTTCCTGCCTTTTCACACTATTCTGCTAGGAGTCCCAGCCTCTTAGATCTGAAGATGCATGTCCGGCCAAATGGTGATGGTAGTGGTCTCCAGCAGCCGCTTCCTCTGAGCTCTGCCTGGTCTTTAGGAGGCCCTGATAAGTGTGGAGTCATCCCTCCTTCAGCTTGGCCTTTAGGTGGTAGTTCTCCTCTTCCATATCCAAATCCTCTGAATCAGCTTCTTGCTATTCCTAAAAGTTGGCGGAATGGTGATTGGATTTGCAAGTGCGGGTTCCATAATTATTCTTCACGGGCGCAGTGCAAAAAGTGCAACGCGTTTCCTCCAGCGCTTGGAACAAAAAGGTTAGCTTCTGAGGAGCTCGTCCATGACTTAGATAACAAGAGACCAAATGTTGGACAGCATTCTTACCCAGGTTTTGAGCATATGGCGAGACCGTTTGGAGATCCCAATATGGGATTATATGCCTCCTTTTCCGGTGTAGGCACTCCTTTAGCCCCAAGTTTGCAATTGCCTTTGCAGTTTACACAGCAAGCCACTGCATCTTCACTCCTTGGAAAAGGAGCAAAGCAGTGGCGTGATGGGGATTGGATGTGCATGAACTGCAACAATCATAATTATGCATCACGAGCACAGTGCAACAGGTGTAAAACTCAAAGAGATGCACTTGCTCAGTCAGTGGATGCCATGTAG 957 48.28 MGEGREGDWECSGCKNRNYAFRSFCNRCKQPRLLVDNKTPADSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEIAAIPAIALHGAAFPAFSHYSARSPSLLDLKMHVRPNGDGSGLQQPLPLSSAWSLGGPDKCGVIPPSAWPLGGSSPLPYPNPLNQLLAIPKSWRNGDWICKCGFHNYSSRAQCKKCNAFPPALGTKRLASEELVHDLDNKRPNVGQHSYPGFEHMARPFGDPNMGLYASFSGVGTPLAPSLQLPLQFTQQATASSLLGKGAKQWRDGDWMCMNCNNHNYASRAQCNRCKTQRDALAQSVDAM 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 35434740 35437886 - Bma014204.1 Bma15g00948 97070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00948 318 ProSitePatterns Zinc finger RanBP2-type signature. 52 71 IPR001876 -
Bma15g00948 318 ProSiteProfiles Zinc finger RanBP2 type profile. 48 77 IPR001876 -
Bma15g00948 318 SMART zf_4 172 195 IPR001876 -
Bma15g00948 318 SMART zf_4 283 307 IPR001876 -
Bma15g00948 318 SMART zf_4 7 31 IPR001876 -
Bma15g00948 318 SMART zf_4 50 74 IPR001876 -
Bma15g00948 318 PANTHER OS04G0110600 PROTEIN 167 227 - -
Bma15g00948 318 PANTHER OS04G0110600 PROTEIN 3 138 - -
Bma15g00948 318 PANTHER OS04G0110600 PROTEIN 269 317 - -
Bma15g00948 318 Pfam Zn-finger in Ran binding protein and others 5 32 IPR001876 -
Bma15g00948 318 Pfam Zn-finger in Ran binding protein and others 48 76 IPR001876 -
Bma15g00948 318 Pfam Zn-finger in Ran binding protein and others 281 308 IPR001876 -
Bma15g00948 318 ProSitePatterns Zinc finger RanBP2-type signature. 285 304 IPR001876 -
Bma15g00948 318 Gene3D - 167 198 - -
Bma15g00948 318 Gene3D - 42 77 - -
Bma15g00948 318 Gene3D - 276 310 - -
Bma15g00948 318 Gene3D - 3 33 - -
Bma15g00948 318 PANTHER ZINC FINGER PROTEIN 167 227 - -
Bma15g00948 318 SUPERFAMILY Ran binding protein zinc finger-like 5 33 IPR036443 -
Bma15g00948 318 ProSiteProfiles Zinc finger RanBP2 type profile. 281 310 IPR001876 -
Bma15g00948 318 SUPERFAMILY Ran binding protein zinc finger-like 275 309 IPR036443 -
Bma15g00948 318 ProSiteProfiles Zinc finger RanBP2 type profile. 5 34 IPR001876 -
Bma15g00948 318 SUPERFAMILY Ran binding protein zinc finger-like 42 76 IPR036443 -
Bma15g00948 318 ProSitePatterns Zinc finger RanBP2-type signature. 9 28 IPR001876 -
Bma15g00948 318 PANTHER ZINC FINGER PROTEIN 3 138 - -
Bma15g00948 318 PANTHER ZINC FINGER PROTEIN 269 317 - -
Bma15g00948 318 SUPERFAMILY Ran binding protein zinc finger-like 168 195 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00948 - - - jre:108992034 495.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01059 Bma-Chr6:47426806 Bma15g00948 Bma-Chr15:35434740 4.19E-06 dispersed
Bma14g01868 Bma-Chr14:40047170 Bma15g00948 Bma-Chr15:35434740 3.76E-08 dispersed
Bma15g00948 Bma-Chr15:35434740 Bma15g00258 Bma-Chr15:2551973 1.58E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1104 . . . Bda10g00180 . . . Bma15g00948 . . . Cma07g00432 . Car07g00381 Sed14g1183 Cpe19g00853 . Bhi03g00876 Tan03g2064 Cmetu04g2634 . Hepe04g1584 . . Cla01g01972 Cam01g2064 Cec04g1723 Cco04g1789 Clacu01g2085 Cmu01g1962 Cre04g1636 Cone8ag0845 . . . Lsi01g00609 . . Cme08g00918 . . . . . . . . . . Cmo07g00431 . . . . . . . . . . . . . . . . . . . . . Csa06g03316 Chy02g00582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010373 1 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00948 Bma_Chr15 FPKM 4.755379 5.318306 6.800919 7.5944 6.904586 5.286325 6.534322 7.073711 6.098121 7.797008