Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00960 ATGCGGACACTTTGCGACGCCTGTGAAAGCGCTGCCGCCGCTGTTTTTTGCGCCGCCGATGAAGCCGCCCTCTGCCGATCCTGCGACGAGAAGGTTCATATGTGCAACAAGCTCGCAAGCCGGCATGTTCGAGTTGGCCTAGCAAAGCCCTGTGATGTCAATCGGTGTGATATATGCGAAAATGCACCTGCTTTCTTTTACTGCGAGATTGATGGGAGTTCTCTGTGTTTGCAATGTGATATGATTGTTCATGTTGGAGGTAAAAGAACACACAAAAGATACCTTCTACTAAGGCAGAGAGTTGAGTTTCCGGGCGATAAAGCTATTAATATCAATGATTCTTCTCCACAACCAATGGATCGAGGCGAAACCAAGAGACAGAGTCAGCAAAGTAAGGGGACAGTTGGGGACAATCGAGAAAATCATATGATATCTCCACCAAATGCCGATGGACATTCGAAGAATGGAGCTAAAATGATTGATCTGAATATGAAGCCTCGTAGAATTCATGGCCAAGCTTCAAATAATCAGGTTAGACTGTTTTGTTTTTACCACTTGTTCTCCATCTTCATCACTAATTTCCATAAAATAGAAACTCCAAATGACTCTTTGATTGGACTCAAATTGTTTTTCTTTTATTGGTCGCTGATCTGCTTCTGGCTTATCAAGATCTTTCTCAACTAG 684 43.42 MRTLCDACESAAAAVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLAKPCDVNRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKAININDSSPQPMDRGETKRQSQQSKGTVGDNRENHMISPPNADGHSKNGAKMIDLNMKPRRIHGQASNNQVRLFCFYHLFSIFITNFHKIETPNDSLIGLKLFFFYWSLICFWLIKIFLN 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 36260262 36262332 + Bma014220.1 Bma15g00960 97082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00960 227 CDD Bbox1_BBX-like 4 47 - -
Bma15g00960 227 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Bma15g00960 227 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 178 - -
Bma15g00960 227 MobiDBLite consensus disorder prediction 110 138 - -
Bma15g00960 227 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma15g00960 227 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 178 - -
Bma15g00960 227 CDD Bbox1_BBX-like 56 96 - -
Bma15g00960 227 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Bma15g00960 227 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Bma15g00960 227 MobiDBLite consensus disorder prediction 107 150 - -
Bma15g00960 227 SMART bboxneu5 1 47 IPR000315 GO:0008270
Bma15g00960 227 SMART bboxneu5 51 96 IPR000315 GO:0008270
Bma15g00960 227 Gene3D Classic Zinc Finger 2 96 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00103 Bma15g00960 CCT
Bma06g00103 Bma15g00960 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00103 Bma-Chr6:1487047 Bma15g00960 Bma-Chr15:36260262 1.11E-78 dispersed
Bma13g00920 Bma-Chr13:39618056 Bma15g00960 Bma-Chr15:36260262 6.06E-19 dispersed
Bma15g00960 Bma-Chr15:36260262 Bma01g01259 Bma-Chr1:16771404 3.20E-08 dispersed
Bma01g02354 Bma-Chr1:81170438 Bma15g00960 Bma-Chr15:36260262 2.39E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58516 PF00643 zf-B_box 2.00E-05 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00960 - - tcc:18610806 286.96