Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00978 ATGGCTGAAAGGTTGAAAGACAAGATACTGGATTCAGACAAGATGGTGGATGTGGTTTGTGGTCCTGATGCTTACAGGGACCTACCGAGATTATTGGAGGAAGTCGATTATGGTCAAAAAGGAATCAATACTCTTCTTTCACTTGAAGAAACTTATGCAGATATTAATCCGGTTCGAATTTCCAAAAATTCCGTCACTGCTTTTGTCTCCATCATGAGGGGTTGCAATAATATGTGCTCATTTTGCATTGTTCCTTTCACTAGAGGCAGAGAAAGATCTCGTCCAGTGGAATCAATTGTGAGGGAAGTGGCTGAGCTTTCCAAAGAAGGTGTGAAAGAGGTTACTCTTCTTGGTCAGAATGTTAATAGCTATAATGATGCATCTGGTGAAGAAACAGAAGTTGAACCAGGAAGTAATTGGAAGTTTAGTGAAGGCTTTTCGAGCATGAGCAAGGTAAAGAAAATGGGTTTAAGATTTTCTGATCTCTTGGATCGACTTTCTCTTGAATTTCCTGAAATGAGATTCAGATTTACATCTCCACATCCAAAAGACTTTCCTGATGAACTACTCTATTTAATGCGAGACAGAAGTAATATCTGCAAATATATCCATTTACCTGCGCAAAGTGGAAATAACACAGTTCTTGAAAGAATGCGTCGAGGTTATACCCGCGAAGCCTACTTGGAACTTGTGGAAAAAATCTGGAAAATCATTCCAGATGTGGGACTAAGCAGTGATTTCATATGTGGATTCTGTGAAGAAACGGAGGAAGAGCATGCAGAAACTTTAAGCCTTATCAAAGCTGTTGGCTACGACATGGCTTACATGTTTGCATATAGCATGAGGGAGAAAACTCACGCCCATCGAAATTATGTCGATGATGTTCCAGACGAAATAAAGCAGAGAAGGCTAACTGAACTCATCGGGGCTTTTCGGGAGAGCACAGGCCAGTGCTTTGATTCGCAGATAGGCACCTTTCAACTTGTACTAGTTGAAGGACCCAACAAGAGAGCTCCAACAACAGAGCTGATTGGCAAAACTGACAGAGGCCATAGAGTTTCCTTTGTTAATCAGCCAGTCCCCCATCGAGATGACGATTTCGAGGGGAAAAGATGCCCAGTGGTGGGAGATTTCGTTGAAGTTCTTATATCTAAGTCGACTCGAGCATCGCTCTTTGGAGAGGTACATGCCATATCTAAAATAAGTTCCTTTTACAATAACTTGGCTAGAAAAGCTGTTGCCTGCTGCAGTAGTTAA 1257 41.61 MAERLKDKILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELSKEGVKEVTLLGQNVNSYNDASGEETEVEPGSNWKFSEGFSSMSKVKKMGLRFSDLLDRLSLEFPEMRFRFTSPHPKDFPDELLYLMRDRSNICKYIHLPAQSGNNTVLERMRRGYTREAYLELVEKIWKIIPDVGLSSDFICGFCEETEEEHAETLSLIKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDEIKQRRLTELIGAFRESTGQCFDSQIGTFQLVLVEGPNKRAPTTELIGKTDRGHRVSFVNQPVPHRDDDFEGKRCPVVGDFVEVLISKSTRASLFGEVHAISKISSFYNNLARKAVACCSS 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 37912818 37914177 - Bma014257.1 Bma15g00978 97100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00978 418 Gene3D tm_1862 like domain 63 321 IPR023404 -
Bma15g00978 418 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 1 408 - -
Bma15g00978 418 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 1 358 IPR005839 GO:0006400|GO:0016740|GO:0051539
Bma15g00978 418 ProSitePatterns Methylthiotransferase radical SAM domain signature. 69 89 IPR020612 GO:0051539
Bma15g00978 418 ProSiteProfiles TRAM domain profile. 320 397 IPR002792 -
Bma15g00978 418 SFLD CDK5RAP1 1 400 - -
Bma15g00978 418 Pfam TRAM domain 320 395 IPR002792 -
Bma15g00978 418 ProSiteProfiles Radical SAM core domain profile. 61 317 IPR007197 GO:0003824|GO:0051536
Bma15g00978 418 CDD Radical_SAM 69 292 - -
Bma15g00978 418 Pfam Radical SAM superfamily 69 266 IPR007197 GO:0003824|GO:0051536
Bma15g00978 418 SFLD Radical SAM 1 400 IPR007197 GO:0003824|GO:0051536
Bma15g00978 418 SFLD B12-binding domain containing 24 270 - -
Bma15g00978 418 SMART MiaB 65 306 IPR006638 GO:0003824|GO:0051536
Bma15g00978 418 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 1 37 IPR013848 GO:0035596|GO:0051539
Bma15g00978 418 Gene3D - 1 51 IPR038135 -
Bma15g00978 418 SUPERFAMILY Radical SAM enzymes 59 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00978 - - - qsu:112000850 708.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02651 Bma-Chr1:83992684 Bma15g00978 Bma-Chr15:37912818 2.16E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1052 . . . Bda10g00151 . . . Bma15g00978 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00338 . . Bpe10g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011095 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00978 Bma_Chr15 FPKM 0.986438 1.763951 19.046045 19.478542 1.802078 2.176522 1.398092 2.247741 3.13093 2.657182