Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00991 ATGGATCCGAATTCAGTTAAATCGACTCTCTCTAATTTAGCATTTGGAAATGTAATGGCTGCTGCTGCTCGTGATTATCAAAAGGAATTGCTTGCTCAAGAGAAGTCTCAGGCATCAAGTTCTATAAACCAGGAGGTTGATCTTGATGATTTGATGGACGATCCTGAGCTGGAAAAATTGCATGCAGACAGAATTGCAGCCCTCAAGAAAGAAGCTGAGAAGAGAGAGGCTTTGAAGAAGCAAGGGCATGGAGAGTACAGGGATATAACTGAAGGTGACTTCTTAGGCGAAGTTACTAAGAGTGAAAAAGTGATTTGCCACTTCTATCATCATGAATTCTATCGCTGCAAGATTATGGATAAGCATTTAAAGACCCTTTCAGCAAAGCATCTAGATACAAAATTTCTAAAGCTTGATGCAGAGAATGCACCTTTCTTTGTTACCAAACTTGGAATAAAAACTTTGCCTTGTGTCATTCTCTTCAAGAAAGGGGTTGCCGTGGATAGACTCATCGGGTTTCAAGATCTAGGAGGAAAGGACGATTTCAACATGAGGGCACTCGAAATTGCCCTAATAAAGAAGGGTATTATTAGCGAAAAGAAGCTAGATGAGGACGAAGAAGACGATGGATTCTTCGATGCTAAATTGAGAACCGTGAGAACCTCTGTGGTTGCTGATTCAGATTCGGACTGA 693 40.98 MDPNSVKSTLSNLAFGNVMAAAARDYQKELLAQEKSQASSSINQEVDLDDLMDDPELEKLHADRIAALKKEAEKREALKKQGHGEYRDITEGDFLGEVTKSEKVICHFYHHEFYRCKIMDKHLKTLSAKHLDTKFLKLDAENAPFFVTKLGIKTLPCVILFKKGVAVDRLIGFQDLGGKDDFNMRALEIALIKKGIISEKKLDEDEEDDGFFDAKLRTVRTSVVADSDSD 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 38422377 38424336 - Bma014273.2 Bma15g00991 97113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00991 230 PANTHER THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 1 230 - -
Bma15g00991 230 PANTHER BNAANNG14790D PROTEIN 1 230 - -
Bma15g00991 230 SUPERFAMILY Thioredoxin-like 43 199 IPR036249 -
Bma15g00991 230 Gene3D Glutaredoxin 76 210 - -
Bma15g00991 230 Pfam Thioredoxin 89 173 IPR013766 -
Bma15g00991 230 CDD Phd_like_TxnDC9 81 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00991 - - - mcha:111005664 366.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00670 Bma-Chr5:39202851 Bma15g00991 Bma-Chr15:38422377 2.06E-39 dispersed
Bma15g00991 Bma-Chr15:38422377 Bma13g00507 Bma-Chr13:9725461 2.05E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1028 . . . Bda10g00145 . . . Bma15g00991 . . Cma03g00722 . Car03g00662 . Sed14g1154 . Cpe10g00634 Bhi03g00923 Tan03g2020 Cmetu11g0188 . Hepe04g1548 . . . . . . . . . . . . . . . . . . Blo06g00141 . . Bpe10g00126 . . . . Cmo03g00749 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004628 2 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 5 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00991 Bma_Chr15 FPKM 6.551801 6.742645 17.911856 21.229776 29.088873 31.574379 28.862469 4.698424 5.426376 5.179134