Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00992 ATGGCCACTTCTAGTTCTAGCTTTGACGCCAATCTAAACACCGCCAAAACGGTACTATCTACAGCGGCCTCCTTAGCCGCTACTCTCATGCTTGCTAGATCGGTAGCTAGAGATCTCTTGCCCCATGAATTGCATGAGAATTTCTTCTGGGGAATTCGTAGTTTCTTCTCCAGATTCTCCTCTCAGCTTACTATGGTGATCGACGAGTTCAATGGCCTTGAAAGCAACCAGATTTACGAGGCAGCACAGATCTACTTAGCCTCTAAAGTGTCTCCCTCGACTCAGAGAATCAAAGTCAAAAAATCCGGCGATGAAAAAGGCTTCATCGTCTCCCTCGAAGGCAATGAGGAGGTTGCAGACGTCTTCAATGGCGTTAAATTCAAATGGGTTTTGATCTGTACTAAAATTGAACCACAAAGTTTCCATAACCCTCGCGGCTTCATTTCGTCGGTACGATCGGAGGCTCGGTCGTTCGCGCTCAGCTTCCATAAGAAACACAGAGAAATGGCTCTTGAATCATACTTACCTTACATTGTGAAGGAAGGTAAATCCATGAAGCAAGAGATCAAGACTCTGAAGATCTTCACCGTCGATTATCAGAACATGTATAATATTTCCAATCTGTGGATTGCGACGAACTTAGATCATCCGGCCTCGTTTGACAAGCTCGCAATGGATTCTGAGATCAAAGAATTTATTCTGAAAGATCTCGAATTGTTCGTGAGGAGGAAGGAGTTCTATAGGAAGGTCGGAAAGGCTTGGAAGAGGGGCTATTTACTGTACGGACCTCCGGGGACCGGGAAATCGAGCTTAATTGCGGCGATGGCGAATTATCTGAAATTTGATATCTACGATTTGGAATTGACGGAGCTCCAAAGGAACTCAGATCTTCGGAAGTTGCTAATTACAATTGCGAATCGATCCATTCTGGTTGTGGAGGATATCGATTGCACCATTGATTTCCATGACCGTGCCGCTCAACCACCGTCACCAATGGAAGACCACTACGGCCGCCGACGACAACAGGAGGTAACTTTATCTGGATTGCTCAACTTCATCGACGGGCTATGGTCGAGCTGTGGAGACGAAAGGATCATCGTCTTCACCACCAACCGCAAAGAAAAGCTCGACCCAGCATTACTCCGACCGGGAAGAATGGACGTCCATGTTCACATGTCCTACTGCACTCCTTGTGGGTTCAGGCTTTTAGCCAACAATTACCTTGGATTAAAGAACCACCCTCTCTTCTCCCAGATAGAGGACGCCATTTTAGACGCTCAGGTTACTCCAGCAGAAGTTGCAGAGGAGTTGCTGAAGGGCGAGGATGGTGACGCTGTGCTTGGTGATCTTACTCAGTTTCTGTCTGGAAAGAAGAAGGAGCAAGAGGAAGCCATGGCTGAAAAGGTTCGACAAGAATTGGAGAAGAAGAATTCTCTGCAAGTGGGGAAGGATGGAGAAAAGAAGAAAGACGATGATGGCGAAAACATTAGTTAG 1494 46.52 MATSSSSFDANLNTAKTVLSTAASLAATLMLARSVARDLLPHELHENFFWGIRSFFSRFSSQLTMVIDEFNGLESNQIYEAAQIYLASKVSPSTQRIKVKKSGDEKGFIVSLEGNEEVADVFNGVKFKWVLICTKIEPQSFHNPRGFISSVRSEARSFALSFHKKHREMALESYLPYIVKEGKSMKQEIKTLKIFTVDYQNMYNISNLWIATNLDHPASFDKLAMDSEIKEFILKDLELFVRRKEFYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLELTELQRNSDLRKLLITIANRSILVVEDIDCTIDFHDRAAQPPSPMEDHYGRRRQQEVTLSGLLNFIDGLWSSCGDERIIVFTTNRKEKLDPALLRPGRMDVHVHMSYCTPCGFRLLANNYLGLKNHPLFSQIEDAILDAQVTPAEVAEELLKGEDGDAVLGDLTQFLSGKKKEQEEAMAEKVRQELEKKNSLQVGKDGEKKKDDDGENIS 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 38461314 38462968 + Bma014274.1 Bma15g00992 97114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00992 497 Coils Coil 456 479 - -
Bma15g00992 497 Pfam ATPase family associated with various cellular activities (AAA) 259 393 IPR003959 GO:0005524|GO:0016887
Bma15g00992 497 ProSitePatterns AAA-protein family signature. 364 382 IPR003960 GO:0005524|GO:0016887
Bma15g00992 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 438 IPR027417 -
Bma15g00992 497 SMART AAA_5 254 396 IPR003593 -
Bma15g00992 497 Gene3D - 209 390 IPR027417 -
Bma15g00992 497 Pfam Domain associated at C-terminal with AAA 40 132 IPR025753 -
Bma15g00992 497 PANTHER BCS1 AAA-TYPE ATPASE 10 484 - -
Bma15g00992 497 MobiDBLite consensus disorder prediction 458 497 - -
Bma15g00992 497 Gene3D - 391 459 - -
Bma15g00992 497 PANTHER PROTEIN HYPER-SENSITIVITY-RELATED 4-LIKE 10 484 - -
Bma15g00992 497 CDD AAA 255 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00992 - - K08900 zju:107424651 631.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00472 Bma-Chr10:5388805 Bma15g00992 Bma-Chr15:38461314 1.72E-140 dispersed
Bma10g00473 Bma-Chr10:5437827 Bma15g00992 Bma-Chr15:38461314 1.37E-146 dispersed
Bma15g01044 Bma-Chr15:42040893 Bma15g00992 Bma-Chr15:38461314 1.03E-08 dispersed
Bma15g00992 Bma-Chr15:38461314 Bma15g00993 Bma-Chr15:38504364 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1027 . . . Bda10g00144 . . . Bma15g00992 . . Cma03g00724 Cma07g00469 Car03g00663 . Sed14g1153 . Cpe10g00633 Bhi03g00924 Tan03g2018 Cmetu08g1706 . Hepe04g1547 . . Cla01g01938 Cam01g2025 Cec04g1683 Cco04g1747 Clacu01g2046 Cmu01g1922 Cre04g1599 Cone8ag0825 . Cone6ag1646 . Lsi01g00648 . Chy07g01254 Cme08g00882 . Blo06g00140 . . . . . . . Cmo03g00750 Cmo07g00466 . . . . . . . . . . . . . Cla07g00824 Cam07g0890 Cec07g0942 Cco07g0933 Clacu07g0864 Cmu07g0867 Cre07g1228 Lsi07g00245 Csa06g03274 Chy02g00617 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000988 5 1 1 3 2 3 2 3 3 3 2 3 4 2 3 3 3 3 3 3 3 3 2 3 3 3 3 3 3 3 84