Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g00996 ATGGGTGATTTAACTGCTCCTAAATCCTTCTCGTCGTCCTCCAAAATACCTTTCCGACCAAAAAAGATCCGAAGGATCCTCTCAGATAAACCGCCATCAACGAAGCTGGCTTCTTCTCCTTCATTTGATTCCATTGAATTGGTCACTGGCGCTAGCTCCGAGGCCGAAAAGTTAAACACGTCGGAACCACCCTCTCATTTACTCAAAACCCTAAAATCTTTAGCTTCCTCAGTTGAAATCTCGGTCGCTATCGAACATTTACGCAGCTCTGAGCCACTCTTAGCGAGCCTGATCGATTCCTTTCAAATCCCCCAATTCCAATCATCCAATCCACCATTCGTTGCGCTCGCGAGGAGCATTCTCTATCAGCAGCTAGCTACCAAGGCCGCAAATTCAATCTACGGTCGCTTCACTTCCCTCTGCGGCAGCGAAGCATCGGTGCTCCCAGACGTCGTTCTCGCACTCTCGGCCGCGAAATTGCGCGAAATCGGAGTTTCAGGCCGGAAAGCAAGCTATCTCCATGACCTAGCGACTAAGTTCAGAGACGGAACTTTATCGGATTCGTCGATTCTGGCGATGGACGATGAGGAATTGCTAACAAATCTGACGAGGGTGAAAGGGATAGGGGCTTGGTCGGTGCATATGTTCATGATCTTCTCTCTCCATCGACCGAACGTTCTTCCGATCGGAGATCTTGGGGTTAGAAAAGGAGTTCAGAAGTTATACGGTTTGAGAGAGTTGCCGAAGCCATTGGAGATGGAGAAGCTGTGCCAAACATGGAAGCCATATCGGTCTGTTGGGTCGTGGTATATGTGGAGATTAATGGAGGCAAAAGGGTTCTTACCAATGCCAACAGCAGCAAAAGCGCCATTAATGAATTCATGA 885 48.59 MGDLTAPKSFSSSSKIPFRPKKIRRILSDKPPSTKLASSPSFDSIELVTGASSEAEKLNTSEPPSHLLKTLKSLASSVEISVAIEHLRSSEPLLASLIDSFQIPQFQSSNPPFVALARSILYQQLATKAANSIYGRFTSLCGSEASVLPDVVLALSAAKLREIGVSGRKASYLHDLATKFRDGTLSDSSILAMDDEELLTNLTRVKGIGAWSVHMFMIFSLHRPNVLPIGDLGVRKGVQKLYGLRELPKPLEMEKLCQTWKPYRSVGSWYMWRLMEAKGFLPMPTAAKAPLMNS 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 38618613 38619497 - Bma014279.1 Bma15g00996 97118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g00996 294 PANTHER HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN 7 281 - -
Bma15g00996 294 CDD ENDO3c 113 274 IPR003265 GO:0006284
Bma15g00996 294 SMART endo3end 121 276 IPR003265 GO:0006284
Bma15g00996 294 Gene3D - 85 273 - -
Bma15g00996 294 Pfam HhH-GPD superfamily base excision DNA repair protein 118 261 IPR003265 GO:0006284
Bma15g00996 294 Gene3D Hypothetical protein; domain 2 110 223 - -
Bma15g00996 294 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 7 281 - -
Bma15g00996 294 SUPERFAMILY DNA-glycosylase 110 274 IPR011257 GO:0003824|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g00996 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] - mnt:21403226 331.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00210 Bma-Chr4:1824808 Bma15g00996 Bma-Chr15:38618613 3.38E-101 dispersed
Bma01g02322 Bma-Chr1:80727188 Bma15g00996 Bma-Chr15:38618613 3.59E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g979 . . . Bda10g00135 . . . Bma15g00996 . . Cma03g00747 . Car03g00681 . Sed14g1122 . Cpe10g00616 Bhi03g01301 Tan03g1983 Cmetu08g0437 . Hepe04g1517 . . Cla01g01912 Cam01g1999 Cec04g1654 Cco04g1716 Clacu01g2018 Cmu01g1892 Cre04g1568 . . Cone6ag1624 . Lsi01g00672 . . Cme08g00849 . Blo06g00134 . . Bpe10g00120 . . . . Cmo03g00774 . . . . . . . . . . . . . . . . . . . . . . Csa06g03241 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011094 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g00996 Bma_Chr15 FPKM 14.625247 18.916409 22.570374 21.953117 28.444197 28.97575 26.452312 17.369743 15.459444 15.669215