Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g01000 ATGTGGCGGTGCGTTTCTCGCGGTCTTAGCTTATCTTCTTCCTTCACCTCATCAAGGACGTCGCCTCCCTCTCCTTCTTTCAGATCTCTCATTTCTCGACCGTTTTCTGCCGATACGCCTGCAGATCGCTCTTCATACACTGTTGTTGATCATGAGTACGACGCTGTCGTTGTTGGAGCGGGGGGTGCGGGGTTAAGGGCTGCCATTGGACTCTCAGAACATGGATTCAACACTGCTTGCATTACCAAACTTTTTCCAACTCGTTCCCACACCGTTGCAGCTCAGGGTGGTATAAACGCTGCCCTAGGGAACATGACTGAAGATGACTGGAGGTGGCACATGTATGATACAGTCAAAGGAAGCGACTGGCTGGGTGATCAAGATGCCATTCAGTACATGTGCAGGGAGGCACCAAAAGCTGTCATTGAACTTGAGAATTATGGATTGCCATTTTCTAGAACTGAAGAGGGAAGAATATATCAGCGGGCATTTGGTGGTCAGAGTCTTGACTTTGGAAAAGGTGGACAGGCATATCGCTGTGCATGTGCTGCTGACCGAACTGGCCATGCTTTATTACATACTCTTTATGGCCAAGCTATGAAGCATAACACACAATTTTTTGTGGAATATTTTGCTTTGGATCTCCTAATGAATAGTGATGGTAGCTGTCAAGGGGTGATAGCGTTAAATATGGATGATGGGACACTCCACCGATTCCATGCTGCCTCAACCATTCTAGCTACGGGGGGTTATGGTAGAGCATATTTCTCTGCCACCTCAGCTCACACTTGCACTGGAGATGGGAATGGCATGGTTGCACGGGCCGGGATCCCATTGGAGGACTTGGAGTTTGTGCAGTTTCATCCTACTGGTATTTATGGTGCCGGGTGTCTCATTACTGAAGGATCTCGTGGCGAAGGTGGTATTCTAAGGAATAGTGAAGGTGAGCGTTTCATGGAACGGTATGCCCCAACTGCTAAGGACCTTGCTTCAAGAGATGTTGTTTCTAGATCCATGACTATGGAAATCAGAGAAGGTCGTGGCGTAGGACCCCTGAAGGATCATATCTATCTGCATCTAAATCACTTACCACCGGATGTACTCAAGGAGAGGCTTCCTGGTATCTCAGAAACTGCTGCCATTTTTGCTGGTGTAGATGTTACGAAGGAACCCATTCCTGTTTTACCTACCGTGCATTATAATATGGGTGGGATTCCCACTAATTACCATGGAGAGGTTGTTACAATTAAAGGTGATGATCCAGATACAGTAATTCCTGGACTAATGGCTGCTGGGGAGGCAGCATGTGCATCCGTTCATGGTGCCAACAGGCTTGGCGCAAATTCACTTCTTGACATTGTGGTTTTTGGACGAGCGTGTGCAAATAGAGTTGCAGAGATACATAGGCCGGGGGAGAAACAAAAGCCACTGGAAAAGGATGCTGGTGAGAAGACTATTTCATGGTTAAACAAATTAAGGTACTCAAGTGGTTCATTACCAACTCCAAAAATCCGATTGAATATGCAGCGAATAATGCAAAATAATGCTGCTGTGTTCCGAACCCAGGAAACATTAGAAGAGGGTTGTAAATTGATTGATAATGTGTGGAAGAGCTTTCATGATGTAAAGGTGAAAGACCGGAGTTTAATATGGAACTCCGACTTGATTGAGACTATAGAGTTGGAGAACCTTTTGATAAATGCATGTATTACTATGCATTCTGCCGAAGCAAGGAAAGAAAGCCGAGGAGCACATGCTCGTGAAGATTTCACGAAAAGAGATGATGAGAACTGGATGAAACACACGTTGGGATATTGGGAGAACGAGGCAGTCCGGTTAGATTACAGGCCAGTTCATTTGAACACATTAGATGATGAGATCGAAACATTCCCTCCTAAAGCTCGTGTTTACTGA 1914 45.77 MWRCVSRGLSLSSSFTSSRTSPPSPSFRSLISRPFSADTPADRSSYTVVDHEYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGRIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNMDDGTLHRFHAASTILATGGYGRAYFSATSAHTCTGDGNGMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDTVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLEKDAGEKTISWLNKLRYSSGSLPTPKIRLNMQRIMQNNAAVFRTQETLEEGCKLIDNVWKSFHDVKVKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEAVRLDYRPVHLNTLDDEIETFPPKARVY 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 38806923 38812466 - Bma014284.2 Bma15g01000 97122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g01000 637 Pfam FAD binding domain 54 450 IPR003953 -
Bma15g01000 637 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 282 400 IPR027477 -
Bma15g01000 637 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 2 637 - -
Bma15g01000 637 MobiDBLite consensus disorder prediction 7 27 - -
Bma15g01000 637 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 88 97 IPR003952 GO:0016491
Bma15g01000 637 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 2 637 IPR030664 -
Bma15g01000 637 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 292 395 IPR027477 -
Bma15g01000 637 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 51 637 IPR011281 GO:0006099|GO:0016627|GO:0050660
Bma15g01000 637 Pfam Fumarate reductase flavoprotein C-term 506 637 IPR015939 GO:0016491
Bma15g01000 637 Gene3D - 477 587 - -
Bma15g01000 637 Gene3D - 54 461 IPR036188 -
Bma15g01000 637 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 54 637 IPR014006 GO:0016627|GO:0022900|GO:0050660
Bma15g01000 637 PIRSF SDHA_APRA_LASPO 44 626 - -
Bma15g01000 637 MobiDBLite consensus disorder prediction 1 27 - -
Bma15g01000 637 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 497 637 IPR037099 GO:0016491
Bma15g01000 637 Gene3D succinate dehydrogenase protein domain 588 637 - -
Bma15g01000 637 SUPERFAMILY FAD/NAD(P)-binding domain 43 473 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g01000 K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1] - qsu:112003267 1164.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01491 Bma-Chr14:30168871 Bma15g01000 Bma-Chr15:38806923 1.71E-55 dispersed
Bma15g01000 Bma-Chr15:38806923 Bma14g01526 Bma-Chr14:30795299 1.21E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g958 . . . Bda10g00132 . . . Bma15g01000 Cmo04g00839 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1616 Cone9ag1541 . . Chy07g01293 . . Blo06g00133 . Bda14g01154 Bpe10g00117 . . . . . . . . . . . Cpe14g00560 . . . . . . . Cla07g00870 Cam07g0941 Cec07g1008 Cco07g0987 Clacu07g0917 Cmu07g0916 Cre07g1287 Lsi07g00203 Csa04g00508 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g01000 Bma_Chr15 FPKM 41.330143 43.741142 29.012224 29.221565 39.265823 39.956306 43.232964 26.922812 24.96611 26.29011