Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g01004 ATGCCGACTGAGTTAGACAATTCCTCCACTGCTTCAGGCGAAGCTAGTGTTTCCTCCTCTGGAAATCAACCGCCACCTCCAAAATCATCAGCTAAGAAAAAGCGAAACTTACCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCAAAGACTCTCATGGCGACGAATCGATTCGTTTGTGAAATTTGCAACAAGGGTTTTCAAAGGGATCAGAATTTGCAACTGCATCGAAGAGGTCATAATCTACCATGGAAGCTGAAGCAGCGATCGAGTAAGGAGGTAAAGAAGAGAGTGTATGTCTGCCCGGAGCCGTCTTGTGTCCACCACGATCCATCGAGAGCTCTGGGTGATCTCACCGGAATAAAGAAGCATTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCAGTTCAGTCGGACTGGAAAGCTCATTCCAAAATCTGCGGCACCAGAGAGTACAAGTGCGATTGCGGAACGTTGTTTTCCAGGAGGGATAGCTTCATCACCCACAGAGCTTTTTGCGATGCGTTGGCTGAGGAGAGCGCCAGAGCTCGAACTCATCCCCAACCACCAACAATGGCGAATCCAAATTCCGAGTCCGACCCAAAAGTTCCACCATCCCCATCTTCTTCAGCTCCGGCGCTGCCGGCTCCCCCGCAGTCAACTGGGGCTGTCGTCTCCTCAGTTTTGCCGATTCAAAAGCTGCCGGAAAATCCCCCGCAAATTATCGAAGATGTAGCGGCAGCTGGACCGGGATTAAACGGGAGCTGCAGCAGCAGTTCGAGCCCAAGCAGCCATAGGTGCTCGAACAGTAGTGTATTTGCGAGCTTGTTTGCTTCGACAAATGCAGCAGTGAGCTTACCACCTCCTCAACCTCCTGCATTTACCGACCTGATAAGAGCCATGGGAAGGCCTGATCGGCCGGCAGAACTCGCTTTATCTTCACCCACCGAACCCATTTCTCTCTGCCTCTCAACTAGCCATCACGGGTCATCAATTTTTGGGGCTGCAGGCCAATATCCACCTCCACAACCGGCTATGTCAGCCACAGCCCTTCTTCAGAAAGCAGCTCAAATGGGGGCTGCAGCCACTAATGCATCATTTCTTCGAGGGTTTGGAGTAGTGGCCTCGACTTCGACCTCTACGCAGCAGCAATGGAGTCAGAGGCAAGTCGACCCAGATTCCGCCTCAATAGCCGCAGGGCTCGGCCTGGGACTTCCTTATGATGGAAGTTCTGGATTGAAGGAACTGATGATGGGAAATCATTTCATTTTTGGTCCTAAGCAAACTACGCTTGATTTTCTAGGTCTCGGAATGGCAGCCGGTATCACGTCCATTGGTGGCGGTCTAGATGTCACAGCGGCAGCCTCCTTTGGAGGTGGGGAATTCTCCGGCAAAGACATTAGTAGAAACTCTTGA 1452 51.31 MPTELDNSSTASGEASVSSSGNQPPPPKSSAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARARTHPQPPTMANPNSESDPKVPPSPSSSAPALPAPPQSTGAVVSSVLPIQKLPENPPQIIEDVAAAGPGLNGSCSSSSSPSSHRCSNSSVFASLFASTNAAVSLPPPQPPAFTDLIRAMGRPDRPAELALSSPTEPISLCLSTSHHGSSIFGAAGQYPPPQPAMSATALLQKAAQMGAAATNASFLRGFGVVASTSTSTQQQWSQRQVDPDSASIAAGLGLGLPYDGSSGLKELMMGNHFIFGPKQTTLDFLGLGMAAGITSIGGGLDVTAAASFGGGEFSGKDISRNS 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 39068700 39070754 + Bma014287.1 Bma15g01004 97126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g01004 483 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Bma15g01004 483 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Bma15g01004 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Bma15g01004 483 Gene3D Classic Zinc Finger 41 107 - -
Bma15g01004 483 Gene3D Classic Zinc Finger 115 195 - -
Bma15g01004 483 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 482 - -
Bma15g01004 483 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 482 - -
Bma15g01004 483 MobiDBLite consensus disorder prediction 1 45 - -
Bma15g01004 483 SMART c2h2final6 61 83 IPR013087 -
Bma15g01004 483 SMART c2h2final6 102 132 IPR013087 -
Bma15g01004 483 SMART c2h2final6 137 157 IPR013087 -
Bma15g01004 483 MobiDBLite consensus disorder prediction 212 226 - -
Bma15g01004 483 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Bma15g01004 483 MobiDBLite consensus disorder prediction 193 234 - -
Bma15g01004 483 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma09g00064 Bma15g01004 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00064 Bma-Chr9:1635027 Bma15g01004 Bma-Chr15:39068700 0 dispersed
Bma09g00967 Bma-Chr9:49199775 Bma15g01004 Bma-Chr15:39068700 5.63E-118 dispersed
Bma10g00024 Bma-Chr10:346417 Bma15g01004 Bma-Chr15:39068700 3.15E-113 dispersed
Bma13g01231 Bma-Chr13:45549782 Bma15g01004 Bma-Chr15:39068700 2.09E-117 dispersed
Bma15g00065 Bma-Chr15:786924 Bma15g01004 Bma-Chr15:39068700 5.37E-110 dispersed
Bma15g00620 Bma-Chr15:7892269 Bma15g01004 Bma-Chr15:39068700 5.95E-114 dispersed
Bma10g01054 Bma-Chr10:29024467 Bma15g01004 Bma-Chr15:39068700 3.01E-100 transposed
Bma15g01004 Bma-Chr15:39068700 Bma09g00070 Bma-Chr9:1759035 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58519 PF00096 zf-C2H2 0.0048 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g01004 K25869 - tcc:18610967 708.368