Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g01028 ATGCCGGGCGTTTATAAGGAGGTCGGGGCTTCGTTCGGTGCCGATCCGACTGGTTTAGGTTCTCTTATTCTAATCCGATCGATCGTCCAGTTCTTATGTTATCCTCTCGCTGCTTACCTCGCCATCCGTCACAACCGCATCACCGTCATCGCCGCCGGAACCATTCTCAGAGCCGCTTCCACTGTTCACGTCGCCGTTGCCTCCACTTTCTTTGAGGTGAAATTTTCTAGAGTTTTAAATGGAATAGGAATCGCCATCGTTGCACCGGCGATCCAGTCCCTCGTCGCCGATTCTACTCCCCCGGGAGACCTCGGGAAGGCGTTTGGATTACTGCATTTTACGGGAAACGTCGGCGCAATTGTCGGCGGTCTCTTTTCACTGTTAGTAGCTCCGAAATCTCTCATGGGAATCGCCGGCTGGAGAATGGCTTTCCATCTCGTCGGAATTCTCAGCGTCGTCTCTGGTATCTTATTTCATCGTTTCGCCGTAGATCCTCATTTCATAGACGAAAAACCAAAACAACCTGAAGGAAAAGGTTATAGCAATCCCTTTTGGTCGGAAATGAAGGAGCTTGCACACGACGCAAAATCAGTGATTAAAATTCCGTCATTTCAGATAATCGTTGCTCAGGGAGTAGCCGGATCGTTAACTCGATCGGCCTTCAATTTCGCCCCGATGTGGCTTGAGCTCATCGGCTTCTCGCCGGAGCAGACGGCTTTCTTGCTGCTCGTTTTTGTCATCGGCGGGTCGCTTGGGGCCGTGTTTGGAGGGTGGTTTGGGGATATACTCGCGAAACGGTATCCGAACTCCGGAAGGATAATTTTAACTCAGATAAGTGCAGGTCTGGCGATTCCGATCTCTGCAATTCTTCAACTCGTCTTGCCGATTGACCCATCAATTGCGGCCGTTTATTACTTCCTGTTGTTCATAATGGGTTTCAGCATGTCGTGGAACTCCTCTCCAGCGAACAACCCAATATTTGCAGAGATCATACCGGAAAAGTCTCGGCCAAACATCTACGCGTTGGATCGATCATTGGAGTCCATATTATCGTCATTTGCTCCTTCAATCGTTGGATTCCTAGCTCAATATATATATGATTTCAAACCCATCTCAAGAGGAGCTTCAAGTTCTGTAAAAGTAGAAATGGATAGAGAAAATGCAGCCTCTCTGGGGAAAGCTCTGTTTGTAGTTACAGGAGTTCCAATGGCGTTTTGCTGGTTCATGTGTTTCTTCCTCTTCTCCACTTACCCTAGAGATCGGAAGACTGCTCGGTTACCTTCTTTGCTCACTAAAAATCCAAACTCGTAG 1311 48.36 MPGVYKEVGASFGADPTGLGSLILIRSIVQFLCYPLAAYLAIRHNRITVIAAGTILRAASTVHVAVASTFFEVKFSRVLNGIGIAIVAPAIQSLVADSTPPGDLGKAFGLLHFTGNVGAIVGGLFSLLVAPKSLMGIAGWRMAFHLVGILSVVSGILFHRFAVDPHFIDEKPKQPEGKGYSNPFWSEMKELAHDAKSVIKIPSFQIIVAQGVAGSLTRSAFNFAPMWLELIGFSPEQTAFLLLVFVIGGSLGAVFGGWFGDILAKRYPNSGRIILTQISAGLAIPISAILQLVLPIDPSIAAVYYFLLFIMGFSMSWNSSPANNPIFAEIIPEKSRPNIYALDRSLESILSSFAPSIVGFLAQYIYDFKPISRGASSSVKVEMDRENAASLGKALFVVTGVPMAFCWFMCFFLFSTYPRDRKTARLPSLLTKNPNS 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 40935444 40936982 - Bma014322.1 Bma15g01028 97150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g01028 436 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 418 IPR020846 GO:0022857
Bma15g01028 436 PANTHER - 1 430 - -
Bma15g01028 436 PANTHER SPINSTER 1 430 IPR044770 -
Bma15g01028 436 SUPERFAMILY MFS general substrate transporter 10 418 IPR036259 -
Bma15g01028 436 Pfam Major Facilitator Superfamily 8 355 IPR011701 GO:0022857|GO:0055085
Bma15g01028 436 Gene3D MFS general substrate transporter like domains 3 376 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g01028 - - - nnu:104600132 532.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02618 Bma-Chr1:83760184 Bma15g01028 Bma-Chr15:40935444 6.53E-178 dispersed
Bma09g00361 Bma-Chr9:30650651 Bma15g01028 Bma-Chr15:40935444 8.78E-93 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g877 . . . . . Bpe13g00456 . Bma15g01028 . . . Cma07g00510 . Car07g00446 . . . . . . . . . . . . . . . . . . . . Cone3ag0624 . . . . . . . . . . . . . . Cmo07g00508 . . . Car05g00768 . . Bhi10g02053 Tan05g1355 . . Hepe10g1418 . . . . . . . . . . Csa04g00525 . Cme02g00859
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001621 1 2 2 2 2 1 4 2 2 2 2 2 3 2 1 4 2 4 4 2 2 2 2 3 3 2 2 2 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma15g01028 Bma_Chr15 FPKM 16.557274 18.260763 18.464422 17.2416 21.87698 21.953466 23.124268 87.560669 93.341553 88.926651