Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g01036 ATGGCCGCCATTGATTTTTACAGTGGAAGTTCAAGTGAGGAGTTAATGAAAGCGGTCGAGCCTTTTGTGAAAAGCGCTTCATCAAATTCTTCCACTTTTCCACTTTTCGCTTCTTCTTCTTCTTCCTCTTATTTTTCTCTCTCTCCAGTTTCAGCTCAGCCCAATCTCTGCGATTCATCGTCTCCATTAAATGCCCTCTTGTTTTCTCATGGACTCTCGAGTATTGAAGAAATGGGTAGTGGCAAAAAAGGTCCGATAGGGCTGAATCATCTTACTCCATTTCAGATTCGTCAAGTTGAAGCTCAGTTTCAGCTCCAATCCACAATTCATGAAGCTTCAATCAAAACTCAGAAATTCGACAAGTTTCTTCGCCTGAAAGGCTGCTCCATGAAACAGACTGCCTCTCCTCTAAAACCTGCTAAACTCTACAGAGGTGTGAGACAGCGCCATTGGGGAAAATGGGTAGCCGAGATTAGGCTGCCGAGGAATCGGACCAGGCTATGGCTGGGCACATTCGAGACTGCAGAGGAAGCAGCCATAGCTTACGATCAGGCTGCTTATAAGCTCAGAGGTGAATTTTCCAGGCTTAATTTCCCAAATCTCCGGCAAAAATTGGGCGATTTCAAGCCTCTTCACCCATCAGTCGAGGCTAAGCTTCAATCAATTTGCCAGGAATTGGCTGATTTGCAGAAACAGGGGAAAACAGAGCAGCTCTGTTCTATCACTGAAACCAAAATCTCCATTCCCACTCCTCCCCGGCAATCAAATTCAGCCACCTTTTCCTCATCGTCTTCTCCCTCCGAAGAAAACACGGCCGATTTCTCGCCGGAATCCTGCATAACCCTATTGGATTTCTCTGATTCCGATGGCTGCGAAACCAAGAGTTTCGGGTTGGAGAAATACCCTTCTGTCGAAATTGATTGGGCAGCCATTTAA 936 45.94 MAAIDFYSGSSSEELMKAVEPFVKSASSNSSTFPLFASSSSSSYFSLSPVSAQPNLCDSSSPLNALLFSHGLSSIEEMGSGKKGPIGLNHLTPFQIRQVEAQFQLQSTIHEASIKTQKFDKFLRLKGCSMKQTASPLKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFETAEEAAIAYDQAAYKLRGEFSRLNFPNLRQKLGDFKPLHPSVEAKLQSICQELADLQKQGKTEQLCSITETKISIPTPPRQSNSATFSSSSSPSEENTADFSPESCITLLDFSDSDGCETKSFGLEKYPSVEIDWAAI 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 41516200 41517135 - Bma014333.1 Bma15g01036 97158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g01036 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 310 - -
Bma15g01036 311 Pfam AP2 domain 143 192 IPR001471 GO:0003700|GO:0006355
Bma15g01036 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 310 - -
Bma15g01036 311 Gene3D AP2/ERF domain 142 200 IPR036955 GO:0003700|GO:0006355
Bma15g01036 311 MobiDBLite consensus disorder prediction 244 274 - -
Bma15g01036 311 CDD AP2 141 201 IPR001471 GO:0003700|GO:0006355
Bma15g01036 311 SUPERFAMILY DNA-binding domain 142 200 IPR016177 GO:0003677
Bma15g01036 311 PRINTS Ethylene responsive element binding protein signature 165 181 IPR001471 GO:0003700|GO:0006355
Bma15g01036 311 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Bma15g01036 311 ProSiteProfiles AP2/ERF domain profile. 142 199 IPR001471 GO:0003700|GO:0006355
Bma15g01036 311 SMART rav1_2 142 205 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00726 Bma-Chr3:6495324 Bma15g01036 Bma-Chr15:41516200 1.14E-32 dispersed
Bma03g01005 Bma-Chr3:11038397 Bma15g01036 Bma-Chr15:41516200 4.21E-67 dispersed
Bma08g00577 Bma-Chr8:34216703 Bma15g01036 Bma-Chr15:41516200 3.58E-32 dispersed
Bma15g01036 Bma-Chr15:41516200 Bma01g02621 Bma-Chr1:83780233 1.04E-71 transposed
Bma15g01036 Bma-Chr15:41516200 Bma05g01403 Bma-Chr5:53422745 1.76E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58521 PF00847 AP2 1.80E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g01036 K09286 - csv:101211347 286.574