Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g01055 ATGGGGAGCGGAGGAGGATATGGGGATGCCAACCAGAAGATTGATTATGTGTTCAAGGTGGTGTTGATTGGAGACTCGGCCGTCGGCAAATCTCAGATTCTTTCTAGATTTGCTCGCAACGAGTTTAGCTTGGATTCAAAGGCTACCATCGGCGTTGAGTTTCAGACTAGGACTCTCGTTATCCAGCACAAGAGCGTCAAGGCTCAGATCTGGGACACTGCTGGACAAGAACGTTACCGTGCAGTGACTAGTGCATATTATCGAGGTGCTCTTGGAGCAATGCTTGTCTACGACATAACAAAACGGCAGACCTTTGATCACATCCCTCGGTGGTTGGAGGAGTTGAGAAGTCATGCAGATAAGAACACCGTCATCATTCTGATCGGAAACAAAAGCGATCTTCAAAATCAGAGAGCAGTACCCACAGAAGATGCGAAAGAATTTGCTCAGAACGAAGGTTTATTCTTCTTGGAGACATCAGCACTGGAATCAACAAACGTCGAGACTGCTTTTTTGACTGTGCTTACGGAGATCTTCAACATTACGAACAAAAAGAGTCTAGCTGCGGGCGAGAATGAAAGTAATGTCAACCCCCCAGCATCCCTAAGTGGGAAGAAGATCATTGTTCCAGGACCTGATCAGGTAATTCCTGCTAAGAACAAGATGTGCTGTACAGCAACATAA 684 46.2 MGSGGGYGDANQKIDYVFKVVLIGDSAVGKSQILSRFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHIPRWLEELRSHADKNTVIILIGNKSDLQNQRAVPTEDAKEFAQNEGLFFLETSALESTNVETAFLTVLTEIFNITNKKSLAAGENESNVNPPASLSGKKIIVPGPDQVIPAKNKMCCTAT 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 42456067 42457409 + Bma014364.1 Bma15g01055 97177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g01055 227 ProSiteProfiles small GTPase Ras family profile. 10 227 IPR001806 GO:0003924|GO:0005525
Bma15g01055 227 SMART rho_sub_3 20 177 IPR001806 GO:0003924|GO:0005525
Bma15g01055 227 ProSiteProfiles small GTPase Rho family profile. 11 182 - -
Bma15g01055 227 Gene3D - 10 206 IPR027417 -
Bma15g01055 227 SMART rab_sub_5 18 181 - -
Bma15g01055 227 PRINTS Transforming protein P21 ras signature 18 39 - -
Bma15g01055 227 PRINTS Transforming protein P21 ras signature 41 57 - -
Bma15g01055 227 PRINTS Transforming protein P21 ras signature 59 81 - -
Bma15g01055 227 PRINTS Transforming protein P21 ras signature 121 134 - -
Bma15g01055 227 PRINTS Transforming protein P21 ras signature 156 178 - -
Bma15g01055 227 SMART ras_sub_4 15 181 - -
Bma15g01055 227 PANTHER RAS-RELATED PROTEIN RABA4A 1 224 - -
Bma15g01055 227 PANTHER - 1 224 - -
Bma15g01055 227 ProSiteProfiles small GTPase Rab1 family profile. 13 224 - -
Bma15g01055 227 TIGRFAM small_GTP: small GTP-binding protein domain 17 174 IPR005225 GO:0005525
Bma15g01055 227 SMART arf_sub_2 1 185 - -
Bma15g01055 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 186 IPR027417 -
Bma15g01055 227 SMART ran_sub_2 23 222 - -
Bma15g01055 227 Pfam Ras family 19 178 IPR001806 GO:0003924|GO:0005525
Bma15g01055 227 CDD Rab11_like 15 179 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma09g00015 Bma15g01055 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00104 Bma-Chr9:2877093 Bma15g01055 Bma-Chr15:42456067 2.20E-153 dispersed
Bma15g01055 Bma-Chr15:42456067 Bma05g00919 Bma-Chr5:47111036 4.52E-93 dispersed
Bma15g01052 Bma-Chr15:42337837 Bma15g01055 Bma-Chr15:42456067 3.26E-172 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g01055 K07904 - twl:119998204 402.134