Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma15g01082 | ATGGAGCTTCCTCACAGCGCTTCAATGGAGGATTTCCTCCCTCCACGAAGAGACTTGTGGAGTTCTTATTCGACAGCGTTGAATGAGTTGAACTTCCCTTACAATGGGTGGAGCCGCGTTTCTTTAGATGAAAACCCAGTAAATCTCTCGAATCCAGATTTTCTCGGCTACCAAACACCCTCTGATCCAAGTTATACTTTTCTAGACGGTTTTACAGTTTCAGAGCTCGATTCTTCGTTTATGGTTGTCAATGGCGGAGTCCCACCGCCATTTCTACTGCAGGAAGATTACCCATCTGTGATAGAAGAAGAAGGGTTTGGCTTATTTGGGAGGGAAAATCAGAGTTCAGAAGAATTAAATAATGGCAGAAAAAGAGAGGCAGAAGGTGTTTTTGTGGGTTTCAATGGGAAAAAGAGCAAGACGAAGAAGATTGAAGGTCAGTTCTCCAAGAATTTAATGGCGGAAAGGAGAAGAAGAAAGCGTTTGAACGATCGGCTTTCCATGCTTAGATCAATAGTACCCAAGATAAGCAAGGACAGTCTCATGCAGATGGACAGAACGTCGATACTTGGAGATGCAATAGATTATATGAGACTGCTTCTGCAGAAAATTACCGACTTGAAGGAAGGAGAAGATGAAGATTTACACCCAAATGAAGTTGCAGTAGCAAGAAGCAGCCCAATGTTCGAGGTGGAGAAGAAAGAGAGCGAAACGAGGATCCATGTCTGCTGTGCTTCCAGGCCGGGATTGTTGTTGTCGACGTTAAGTACGTTAGAAGCATTTGGGCTGGAGATTCAACACTGTGTGATTAGCTGCTTCAATGATTTTTCAGTTCAAGCTTCTTGCTCCCAGGGAGGAGAGCAGGCATCGGTTGTGAGTTCCGACGATGTAAAGCAAGCACTGTTCCGAACTTCAGGGTATGTAGGAAGGTGTTAG | 936 | 44.55 | MELPHSASMEDFLPPRRDLWSSYSTALNELNFPYNGWSRVSLDENPVNLSNPDFLGYQTPSDPSYTFLDGFTVSELDSSFMVVNGGVPPPFLLQEDYPSVIEEEGFGLFGRENQSSEELNNGRKREAEGVFVGFNGKKSKTKKIEGQFSKNLMAERRRRKRLNDRLSMLRSIVPKISKDSLMQMDRTSILGDAIDYMRLLLQKITDLKEGEDEDLHPNEVAVARSSPMFEVEKKESETRIHVCCASRPGLLLSTLSTLEAFGLEIQHCVISCFNDFSVQASCSQGGEQASVVSSDDVKQALFRTSGYVGRC | 311 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 43172903 | 43174386 | + | Bma014397.1 | Bma15g01082 | 97204 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma15g01082 | 311 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 151 | 216 | IPR036638 | GO:0046983 | |
Bma15g01082 | 311 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 146 | 200 | IPR011598 | GO:0046983 | |
Bma15g01082 | 311 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 67 | 311 | - | - | |
Bma15g01082 | 311 | PANTHER | DNA BINDING PROTEIN | 67 | 311 | - | - | |
Bma15g01082 | 311 | Pfam | Helix-loop-helix DNA-binding domain | 153 | 200 | IPR011598 | GO:0046983 | |
Bma15g01082 | 311 | SMART | finulus | 152 | 206 | IPR011598 | GO:0046983 | |
Bma15g01082 | 311 | Gene3D | - | 135 | 201 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01364 | Bma-Chr1:20572559 | Bma15g01082 | Bma-Chr15:43172903 | 6.72E-37 | dispersed | |
Bma04g00423 | Bma-Chr4:3423204 | Bma15g01082 | Bma-Chr15:43172903 | 3.46E-34 | dispersed | |
Bma15g01082 | Bma-Chr15:43172903 | Bma03g00615 | Bma-Chr3:5045522 | 1.84E-14 | dispersed | |
Bma14g01421 | Bma-Chr14:26921993 | Bma15g01082 | Bma-Chr15:43172903 | 5.26E-23 | transposed | |
Bma15g01082 | Bma-Chr15:43172903 | Bma02g00102 | Bma-Chr2:926035 | 9.44E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58524 | PF00010 | HLH | 6.60E-09 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma15g01082 | - | - | qsu:111992110 | 322.398 |