Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma15g01082 ATGGAGCTTCCTCACAGCGCTTCAATGGAGGATTTCCTCCCTCCACGAAGAGACTTGTGGAGTTCTTATTCGACAGCGTTGAATGAGTTGAACTTCCCTTACAATGGGTGGAGCCGCGTTTCTTTAGATGAAAACCCAGTAAATCTCTCGAATCCAGATTTTCTCGGCTACCAAACACCCTCTGATCCAAGTTATACTTTTCTAGACGGTTTTACAGTTTCAGAGCTCGATTCTTCGTTTATGGTTGTCAATGGCGGAGTCCCACCGCCATTTCTACTGCAGGAAGATTACCCATCTGTGATAGAAGAAGAAGGGTTTGGCTTATTTGGGAGGGAAAATCAGAGTTCAGAAGAATTAAATAATGGCAGAAAAAGAGAGGCAGAAGGTGTTTTTGTGGGTTTCAATGGGAAAAAGAGCAAGACGAAGAAGATTGAAGGTCAGTTCTCCAAGAATTTAATGGCGGAAAGGAGAAGAAGAAAGCGTTTGAACGATCGGCTTTCCATGCTTAGATCAATAGTACCCAAGATAAGCAAGGACAGTCTCATGCAGATGGACAGAACGTCGATACTTGGAGATGCAATAGATTATATGAGACTGCTTCTGCAGAAAATTACCGACTTGAAGGAAGGAGAAGATGAAGATTTACACCCAAATGAAGTTGCAGTAGCAAGAAGCAGCCCAATGTTCGAGGTGGAGAAGAAAGAGAGCGAAACGAGGATCCATGTCTGCTGTGCTTCCAGGCCGGGATTGTTGTTGTCGACGTTAAGTACGTTAGAAGCATTTGGGCTGGAGATTCAACACTGTGTGATTAGCTGCTTCAATGATTTTTCAGTTCAAGCTTCTTGCTCCCAGGGAGGAGAGCAGGCATCGGTTGTGAGTTCCGACGATGTAAAGCAAGCACTGTTCCGAACTTCAGGGTATGTAGGAAGGTGTTAG 936 44.55 MELPHSASMEDFLPPRRDLWSSYSTALNELNFPYNGWSRVSLDENPVNLSNPDFLGYQTPSDPSYTFLDGFTVSELDSSFMVVNGGVPPPFLLQEDYPSVIEEEGFGLFGRENQSSEELNNGRKREAEGVFVGFNGKKSKTKKIEGQFSKNLMAERRRRKRLNDRLSMLRSIVPKISKDSLMQMDRTSILGDAIDYMRLLLQKITDLKEGEDEDLHPNEVAVARSSPMFEVEKKESETRIHVCCASRPGLLLSTLSTLEAFGLEIQHCVISCFNDFSVQASCSQGGEQASVVSSDDVKQALFRTSGYVGRC 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 43172903 43174386 + Bma014397.1 Bma15g01082 97204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma15g01082 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 216 IPR036638 GO:0046983
Bma15g01082 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 200 IPR011598 GO:0046983
Bma15g01082 311 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 67 311 - -
Bma15g01082 311 PANTHER DNA BINDING PROTEIN 67 311 - -
Bma15g01082 311 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Bma15g01082 311 SMART finulus 152 206 IPR011598 GO:0046983
Bma15g01082 311 Gene3D - 135 201 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01364 Bma-Chr1:20572559 Bma15g01082 Bma-Chr15:43172903 6.72E-37 dispersed
Bma04g00423 Bma-Chr4:3423204 Bma15g01082 Bma-Chr15:43172903 3.46E-34 dispersed
Bma15g01082 Bma-Chr15:43172903 Bma03g00615 Bma-Chr3:5045522 1.84E-14 dispersed
Bma14g01421 Bma-Chr14:26921993 Bma15g01082 Bma-Chr15:43172903 5.26E-23 transposed
Bma15g01082 Bma-Chr15:43172903 Bma02g00102 Bma-Chr2:926035 9.44E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58524 PF00010 HLH 6.60E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma15g01082 - - qsu:111992110 322.398